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Need to compare mitch enrichment results against ground truth #1

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markziemann opened this issue Apr 12, 2020 · 0 comments
Open

Need to compare mitch enrichment results against ground truth #1

markziemann opened this issue Apr 12, 2020 · 0 comments

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@markziemann
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markziemann commented Apr 12, 2020 •
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ground truth = desets as shown on line 162
mitch_res$enrichment_results = observed
calculate sensitivity and sensitivity https://en.wikipedia.org/wiki/Sensitivity_and_specificity

obs <- mitch_res$enrichment_results$Set
TP = length(intersect(obs,desets))
FP = length(setdiff(obs,desets))
FN= length(setdiff(desets,obs))
TN= length(mysets) - (TP+FP+FN)

sensitivity=TP/(TP+FN)
specificity , and F1 score
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