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ground truth = desets as shown on line 162 mitch_res$enrichment_results = observed calculate sensitivity and sensitivity https://en.wikipedia.org/wiki/Sensitivity_and_specificity
obs <- mitch_res$enrichment_results$Set TP = length(intersect(obs,desets)) FP = length(setdiff(obs,desets)) FN= length(setdiff(desets,obs)) TN= length(mysets) - (TP+FP+FN)
sensitivity=TP/(TP+FN) specificity , and F1 score
The text was updated successfully, but these errors were encountered:
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ground truth = desets as shown on line 162
mitch_res$enrichment_results = observed
calculate sensitivity and sensitivity https://en.wikipedia.org/wiki/Sensitivity_and_specificity
obs <- mitch_res$enrichment_results$Set
TP = length(intersect(obs,desets))
FP = length(setdiff(obs,desets))
FN= length(setdiff(desets,obs))
TN= length(mysets) - (TP+FP+FN)
sensitivity=TP/(TP+FN)
specificity , and F1 score
The text was updated successfully, but these errors were encountered: