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MRO_DISK_SPACE_CHECK #9

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wyim-pgl opened this issue Oct 24, 2018 · 3 comments
Closed

MRO_DISK_SPACE_CHECK #9

wyim-pgl opened this issue Oct 24, 2018 · 3 comments
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invalid obsolete This issue relates to an older version of Martian.

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@wyim-pgl
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Hello,
During the processing Supernova assembler, It crashed with a lack of space.
I secured the space and tried to run again.
But stuck in error.

I set the environment MRO_DISK_SPACE_CHECK=disable on my .bashrc.
But it still making error message.

Where can I put MRO_DISK_SPACE_CHECK=disable ?
Thanks

########
Log message:
/home/ascendo_u/data/J_56x/ASSEMBLER_CS has only 9088kB remaining space available.
To ignore this error, set MRO_DISK_SPACE_CHECK=disable in your environment.

Waiting 6 seconds for UI to do final refresh.
Pipestance failed. Use --noexit option to keep UI running after failure.

Saving pipestance info to J_56x/J_56x.mri.tgz
For assistance, upload this file to 10x Genomics by running:

supernova upload <your_email> J_56x/J_56x.mri.tgz

@adam-azarchs
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The command you need in your .bashrc or .bash_profile is export MRO_DISK_SPACE_CHECK=disable. Without export bash only applies the environment variable to commands on the same line. You also need to make sure you source .bashrc or source .bash_profile after editing it. Alternatively you can run MRO_DISK_SPACE_CHECK=disable supernova ... to set it just for that command.

@wyim-pgl
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Of course, I did source my bashrc with export.

image

@wyim-pgl
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wyim-pgl commented Oct 24, 2018

image

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@adam-azarchs adam-azarchs added obsolete This issue relates to an older version of Martian. invalid labels Oct 24, 2018
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Labels
invalid obsolete This issue relates to an older version of Martian.
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