Spatial mapping of single cells
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Maryam Zand & Dr. Jianhua Ruan Nov 2018 Abstact: Spatial mapping of single cells in the Drosophila embryo from transcriptomic data based on topological consistency Script to run the program: main.m This path should be added to matlab path : "../ALL_files" All_files contains scRNAseq and insitu expression data that are accessible from this link: https://www.synapse.org/#!Synapse:syn15665609/wiki/582909 Functions %% first, perform gene selection to get 60, 40, and 20 genes, using SUPERVISED feature selection GeneSelectionMain %% Use PSO to obtain optimal gene weights for different folds of training data PSOGeneWeightsMain %% Make predictions on testing data using weights learned from above makePredictions_subc1 makePredictions_subc2 makePredictions_subc3
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