seqator

seqator

Description

Script moves "SPAdes-like" *.dna files with coverage less than specified one from contigs/ directory to directory cov_below_x/.

"SPAdes-like" means that name of file is of following format:

NODE_1_length_61704_cov_114.517.dna

Dependencies

The script is written in Python, so you need Python interpreter (version 3.X) to use it. Here you can download Python.

Options

-h (--help): print help message;

-v (--version): print version;

Usage

You can specify coverage threshold in command line:

python3 seqator.py 12

Or run just this, and script will ask you to enter threshold from keyboard:

python3 seqator.py