Skip to content

Commit

Permalink
Update dev docs
Browse files Browse the repository at this point in the history
  • Loading branch information
shyuep committed Mar 10, 2018
1 parent 666e100 commit ecbbc8a
Show file tree
Hide file tree
Showing 53 changed files with 12,401 additions and 945 deletions.
4 changes: 2 additions & 2 deletions custodian/__init__.py
Expand Up @@ -2,6 +2,6 @@

__author__ = "Shyue Ping Ong, William Davidson Richards, Stephen Dacek, " \
"Xiaohui Qu"
__version__ = "2017.12.23"
__version__ = "2018.3.10"

from .custodian import Custodian
from .custodian import Custodian
89 changes: 41 additions & 48 deletions docs/_modules/custodian/ansible/actions.html

Large diffs are not rendered by default.

33 changes: 13 additions & 20 deletions docs/_modules/custodian/ansible/interpreter.html
Expand Up @@ -4,20 +4,12 @@

<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<meta http-equiv="X-UA-Compatible" content="IE=Edge" />
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<title>custodian.ansible.interpreter &#8212; custodian 2017.12.23 documentation</title>
<title>custodian.ansible.interpreter &#8212; custodian 2018.3.10 documentation</title>
<link rel="stylesheet" href="../../../_static/flasky.css" type="text/css" />
<link rel="stylesheet" href="../../../_static/pygments.css" type="text/css" />
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT: '../../../',
VERSION: '2017.12.23',
COLLAPSE_INDEX: false,
FILE_SUFFIX: '.html',
HAS_SOURCE: true,
SOURCELINK_SUFFIX: '.txt'
};
</script>
<script type="text/javascript" src="../../../_static/documentation_options.js"></script>
<script type="text/javascript" src="../../../_static/jquery.js"></script>
<script type="text/javascript" src="../../../_static/underscore.js"></script>
<script type="text/javascript" src="../../../_static/doctools.js"></script>
Expand All @@ -36,8 +28,7 @@
_gaq.push(['_trackPageview']);
</script>

</head>
<body>
</head><body>
<div class="related" role="navigation" aria-label="related navigation">
<h3>Navigation</h3>
<ul>
Expand All @@ -47,7 +38,7 @@ <h3>Navigation</h3>
<li class="right" >
<a href="../../../py-modindex.html" title="Python Module Index"
>modules</a> |</li>
<li class="nav-item nav-item-0"><a href="../../../index.html">custodian 2017.12.23 documentation</a> &#187;</li>
<li class="nav-item nav-item-0"><a href="../../../index.html">custodian 2018.3.10 documentation</a> &#187;</li>
<li class="nav-item nav-item-1"><a href="../../index.html" accesskey="U">Module code</a> &#187;</li>
</ul>
</div>
Expand Down Expand Up @@ -141,8 +132,8 @@ <h1>Source code for custodian.ansible.interpreter</h1><div class="highlight"><pr
<span class="k">if</span> <span class="n">action</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">supported_actions</span><span class="p">:</span>
<span class="bp">self</span><span class="o">.</span><span class="n">supported_actions</span><span class="p">[</span><span class="n">action</span><span class="p">]</span><span class="o">.</span><span class="fm">__call__</span><span class="p">(</span><span class="n">obj</span><span class="p">,</span> <span class="n">settings</span><span class="p">)</span>
<span class="k">elif</span> <span class="bp">self</span><span class="o">.</span><span class="n">strict</span><span class="p">:</span>
<span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;</span><span class="si">{}</span><span class="s2"> is not a supported action!&quot;</span>
<span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">action</span><span class="p">))</span></div>
<span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s2">&quot;</span><span class="si">{}</span><span class="s2"> is not a supported action!&quot;</span></div>
<span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">action</span><span class="p">))</span>

<div class="viewcode-block" id="Modder.modify_object"><a class="viewcode-back" href="../../../custodian.ansible.html#custodian.ansible.interpreter.Modder.modify_object">[docs]</a> <span class="k">def</span> <span class="nf">modify_object</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">modification</span><span class="p">,</span> <span class="n">obj</span><span class="p">):</span>
<span class="sd">&quot;&quot;&quot;</span>
Expand All @@ -154,8 +145,8 @@ <h1>Source code for custodian.ansible.interpreter</h1><div class="highlight"><pr
<span class="sd"> obj (object): Object to modify</span>
<span class="sd"> &quot;&quot;&quot;</span>
<span class="n">d</span> <span class="o">=</span> <span class="n">obj</span><span class="o">.</span><span class="n">as_dict</span><span class="p">()</span>
<span class="bp">self</span><span class="o">.</span><span class="n">modify</span><span class="p">(</span><span class="n">modification</span><span class="p">,</span> <span class="n">d</span><span class="p">)</span>
<span class="k">return</span> <span class="n">obj</span><span class="o">.</span><span class="n">from_dict</span><span class="p">(</span><span class="n">d</span><span class="p">)</span></div></div>
<span class="bp">self</span><span class="o">.</span><span class="n">modify</span><span class="p">(</span><span class="n">modification</span><span class="p">,</span> <span class="n">d</span><span class="p">)</span></div></div>
<span class="k">return</span> <span class="n">obj</span><span class="o">.</span><span class="n">from_dict</span><span class="p">(</span><span class="n">d</span><span class="p">)</span>


<span class="k">if</span> <span class="vm">__name__</span> <span class="o">==</span> <span class="s2">&quot;__main__&quot;</span><span class="p">:</span>
Expand All @@ -176,12 +167,14 @@ <h1>Source code for custodian.ansible.interpreter</h1><div class="highlight"><pr
</ul>
<div id="searchbox" style="display: none" role="search">
<h3>Quick search</h3>
<div class="searchformwrapper">
<form class="search" action="../../../search.html" method="get">
<div><input type="text" name="q" /></div>
<div><input type="submit" value="Go" /></div>
<input type="text" name="q" />
<input type="submit" value="Go" />
<input type="hidden" name="check_keywords" value="yes" />
<input type="hidden" name="area" value="default" />
</form>
</div>
</div>
<script type="text/javascript">$('#searchbox').show(0);</script>
</div>
Expand Down
33 changes: 13 additions & 20 deletions docs/_modules/custodian/cli/converge_geometry.html
Expand Up @@ -4,20 +4,12 @@

<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<meta http-equiv="X-UA-Compatible" content="IE=Edge" />
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<title>custodian.cli.converge_geometry &#8212; custodian 2017.12.23 documentation</title>
<title>custodian.cli.converge_geometry &#8212; custodian 2018.3.10 documentation</title>
<link rel="stylesheet" href="../../../_static/flasky.css" type="text/css" />
<link rel="stylesheet" href="../../../_static/pygments.css" type="text/css" />
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT: '../../../',
VERSION: '2017.12.23',
COLLAPSE_INDEX: false,
FILE_SUFFIX: '.html',
HAS_SOURCE: true,
SOURCELINK_SUFFIX: '.txt'
};
</script>
<script type="text/javascript" src="../../../_static/documentation_options.js"></script>
<script type="text/javascript" src="../../../_static/jquery.js"></script>
<script type="text/javascript" src="../../../_static/underscore.js"></script>
<script type="text/javascript" src="../../../_static/doctools.js"></script>
Expand All @@ -36,8 +28,7 @@
_gaq.push(['_trackPageview']);
</script>

</head>
<body>
</head><body>
<div class="related" role="navigation" aria-label="related navigation">
<h3>Navigation</h3>
<ul>
Expand All @@ -47,7 +38,7 @@ <h3>Navigation</h3>
<li class="right" >
<a href="../../../py-modindex.html" title="Python Module Index"
>modules</a> |</li>
<li class="nav-item nav-item-0"><a href="../../../index.html">custodian 2017.12.23 documentation</a> &#187;</li>
<li class="nav-item nav-item-0"><a href="../../../index.html">custodian 2018.3.10 documentation</a> &#187;</li>
<li class="nav-item nav-item-1"><a href="../../index.html" accesskey="U">Module code</a> &#187;</li>
</ul>
</div>
Expand Down Expand Up @@ -130,17 +121,17 @@ <h1>Source code for custodian.cli.converge_geometry</h1><div class="highlight"><
<span class="s2">&quot;action&quot;</span><span class="p">:</span> <span class="p">{</span><span class="s2">&quot;_file_copy&quot;</span><span class="p">:</span> <span class="p">{</span><span class="s2">&quot;dest&quot;</span><span class="p">:</span> <span class="s2">&quot;POSCAR&quot;</span><span class="p">}}}]</span>

<span class="n">job_number</span> <span class="o">+=</span> <span class="mi">1</span>
<span class="k">yield</span> <span class="n">VaspJob</span><span class="p">(</span><span class="n">vasp_command</span><span class="p">,</span> <span class="n">final</span><span class="o">=</span><span class="n">converged</span><span class="p">,</span> <span class="n">backup</span><span class="o">=</span><span class="n">backup</span><span class="p">,</span>
<span class="n">suffix</span><span class="o">=</span><span class="n">suffix</span><span class="p">,</span> <span class="n">settings_override</span><span class="o">=</span><span class="n">settings</span><span class="p">)</span></div>
<span class="k">yield</span> <span class="n">VaspJob</span><span class="p">(</span><span class="n">vasp_command</span><span class="p">,</span> <span class="n">final</span><span class="o">=</span><span class="n">converged</span><span class="p">,</span> <span class="n">backup</span><span class="o">=</span><span class="n">backup</span><span class="p">,</span></div>
<span class="n">suffix</span><span class="o">=</span><span class="n">suffix</span><span class="p">,</span> <span class="n">settings_override</span><span class="o">=</span><span class="n">settings</span><span class="p">)</span>


<div class="viewcode-block" id="do_run"><a class="viewcode-back" href="../../../custodian.cli.html#custodian.cli.converge_geometry.do_run">[docs]</a><span class="k">def</span> <span class="nf">do_run</span><span class="p">(</span><span class="n">args</span><span class="p">):</span>
<span class="n">handlers</span> <span class="o">=</span> <span class="p">[</span><span class="n">VaspErrorHandler</span><span class="p">(),</span> <span class="n">MeshSymmetryErrorHandler</span><span class="p">(),</span>
<span class="n">UnconvergedErrorHandler</span><span class="p">(),</span> <span class="n">NonConvergingErrorHandler</span><span class="p">(),</span>
<span class="n">PotimErrorHandler</span><span class="p">()]</span>
<span class="n">c</span> <span class="o">=</span> <span class="n">Custodian</span><span class="p">(</span><span class="n">handlers</span><span class="p">,</span> <span class="n">get_runs</span><span class="p">(</span><span class="n">args</span><span class="p">),</span> <span class="n">max_errors</span><span class="o">=</span><span class="mi">10</span><span class="p">,</span> <span class="n">gzipped_output</span><span class="o">=</span><span class="n">args</span><span class="o">.</span><span class="n">gzip</span><span class="p">)</span>
<span class="n">c</span><span class="o">.</span><span class="n">run</span><span class="p">()</span>
<span class="n">logging</span><span class="o">.</span><span class="n">info</span><span class="p">(</span><span class="s2">&quot;Geometry optimization complete&quot;</span><span class="p">)</span></div>
<span class="n">c</span><span class="o">.</span><span class="n">run</span><span class="p">()</span></div>
<span class="n">logging</span><span class="o">.</span><span class="n">info</span><span class="p">(</span><span class="s2">&quot;Geometry optimization complete&quot;</span><span class="p">)</span>


<span class="k">if</span> <span class="vm">__name__</span> <span class="o">==</span> <span class="s2">&quot;__main__&quot;</span><span class="p">:</span>
Expand Down Expand Up @@ -191,12 +182,14 @@ <h1>Source code for custodian.cli.converge_geometry</h1><div class="highlight"><
</ul>
<div id="searchbox" style="display: none" role="search">
<h3>Quick search</h3>
<div class="searchformwrapper">
<form class="search" action="../../../search.html" method="get">
<div><input type="text" name="q" /></div>
<div><input type="submit" value="Go" /></div>
<input type="text" name="q" />
<input type="submit" value="Go" />
<input type="hidden" name="check_keywords" value="yes" />
<input type="hidden" name="area" value="default" />
</form>
</div>
</div>
<script type="text/javascript">$('#searchbox').show(0);</script>
</div>
Expand Down

0 comments on commit ecbbc8a

Please sign in to comment.