Major update to Linting

[jmmshn]

Moved to RUFF

Moved linting to RUFF, and addressed docstring issues from

openjournals/joss-reviews#5941 (comment)

[codecov]

Codecov Report

Attention: 3 lines in your changes are missing coverage. Please review.

Comparison is base (e6ed8d6) 90.75% compared to head (5c08017) 90.84%.

Files	Patch %	Lines
pymatgen/analysis/defects/core.py	50.00%	1 Missing and 2 partials ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #162      +/-   ##
==========================================
+ Coverage   90.75%   90.84%   +0.08%     
==========================================
  Files          11       11              
  Lines        2110     2065      -45     
  Branches      403      399       -4     
==========================================
- Hits         1915     1876      -39     
+ Misses        108      102       -6     
  Partials       87       87              

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