Merge abc29eb into 9e319f5

.github/workflows/build.yml

@@ -23,7 +23,7 @@ jobs:
     name: Test build process
     strategy:
       matrix:
-        python-version: [3.6, 3.7, 3.8, 3.9]
+        python-version: ["3.7", "3.8", "3.9", "3.10"]
     runs-on: ubuntu-latest
     steps:
       - name: Checkout
@@ -36,22 +36,60 @@ jobs:
         with:
           python-version: ${{ matrix.python-version }}
 
+      - name: Install dependencies
+        run: |
+          pip install --upgrade pip
+          pip install --upgrade wheel setuptools setuptools_scm
+
       - name: Inspect version info
         run: | 
           python setup.py --version
           git describe --dirty --tags --long --match "*[0-9]*"
 
-      - name: Test pip install syntax (without wheels)
+      - name: Test pip install to site-packages
         run: |
           pip install .
           pip uninstall -y mud
 
-      - name: Install dependencies
+      - name: Test pip install local
         run: |
-          pip install --upgrade pip
-          pip install --upgrade wheel setuptools setuptools_scm
-
-      - name: Test install with wheels
+          pip install -e .
+          pip uninstall -y mud
+ 
+      - name: Test build
         run: |
           python setup.py sdist bdist_wheel
           pip uninstall -y mud
+
+
+  style:
+    name: Enforce style
+    strategy:
+      matrix:
+        python-version: ["3.10"]
+    runs-on: ubuntu-latest
+    steps:
+      - name: checkout
+        uses: actions/checkout@v2
+        with:
+          fetch-depth: 1
+
+      - name: setup
+        uses: actions/setup-python@v1
+        with:
+          python-version: ${{ matrix.python-version }}
+
+      - name: install
+        run: |
+          pip install --upgrade pip
+          pip install -e .[dev]
+
+      - name: linting
+        run: flake8 .
+
+      - name: imports
+        run: isort -c .
+
+      - name: typing
+        run: |
+          mypy src/mud/

.github/workflows/main.yml

@@ -19,14 +19,13 @@ on:
       - cron: "0 0 */7 * *"
 
 jobs:
-  test:
+  unit-tests:
     name: Run unit tests
     strategy:
       matrix:
-        python-version: [3.6, 3.9]
+        python-version: ["3.7", "3.10"]
     runs-on: ubuntu-latest
     steps:
-    # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
       - name: Checkout
         uses: actions/checkout@v2
         with:
@@ -45,14 +44,34 @@ jobs:
       - name: Run unit tests
         run: pytest
 
-      - name: Upload coverage to codecov.io
-        if: ${{ matrix.python-version }} == 3.9
-        run: |
-           export CODECOV_VERSION=${{ secrets.codecov_token }}
-           bash <(curl -s https://codecov.io/bash)
- 
       - name: Upload coverage to coveralls.io
         if: ${{ matrix.python-version }} == 3.9
         run: coveralls --service=github
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+
+  integration-tests:
+    name: Run integration tests
+    strategy:
+      matrix:
+        python-version: ["3.9"]
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v2
+        with:
+          fetch-depth: 1
+
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v1
+        with:
+          python-version: ${{ matrix.python-version }}
+
+      - name: Install dependencies
+        run: |
+          pip install --upgrade pip
+          pip install --upgrade mud-examples
+          pip install -e .
+
+      - name: Check examples
+        run: mud_run_all -v

.github/workflows/publish.yml

@@ -10,7 +10,7 @@ jobs:
     name: "Publish to PyPI"
     strategy:
       matrix:
-        python-version: [3.8]
+        python-version: ["3.9"]
     runs-on: ubuntu-latest
     steps:
       - name: Checkout
@@ -27,7 +27,7 @@ jobs:
         run: pip install --upgrade pip
 
       - name: Install build tools
-        run: pip install .[pub]
+        run: pip install --upgrade .[pub]
 
       - name: Build dist
         run: |

.gitignore

@@ -51,3 +51,7 @@ MANIFEST
 # Per-project virtualenvs
 .venv*/
 
+# Data and figure dirs in notebooks
+notebooks/*_datasets/*
+notebooks/figs/*
+notebooks/*.pickle

AUTHORS.rst

@@ -3,3 +3,4 @@ Contributors
 ============
 
 * Mathematical Michael <consistentbayes@gmail.com>
+* Carlos del-Castillo-Negrete <cdelcastillo21@gmail.com>

docs/conf.py

@@ -7,10 +7,10 @@
 # All configuration values have a default; values that are commented out
 # serve to show the default.
 
-import os
-import sys
 import inspect
+import os
 import shutil
+import sys
 
 # -- Path setup --------------------------------------------------------------