Initial commit

.gitignore

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+# Test DNA
+dna.json
+
+# Coverage report
+coverage
+
+# Installed npm modules
+node_modules
+
+# Folder view configuration files
+.DS_Store
+Desktop.ini
+
+# Thumbnail cache files
+._*
+Thumbs.db
+
+# Files that might appear on external disks
+.Spotlight-V100
+.Trashes

.travis.yml

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+sudo: false
+language: node_js
+node_js:
+  - '0.12'
+  - 'iojs'
+after_script:
+  - 'istanbul cover --verbose --dir coverage node_modules/.bin/_mocha tests/index.js -- -u exports -R spec && cat coverage/lcov.info | coveralls; rm -rf coverage/lcov*'

LICENSE-MIT.txt

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+Copyright Mathias Bynens <https://mathiasbynens.be/>
+
+Permission is hereby granted, free of charge, to any person obtaining
+a copy of this software and associated documentation files (the
+"Software"), to deal in the Software without restriction, including
+without limitation the rights to use, copy, modify, merge, publish,
+distribute, sublicense, and/or sell copies of the Software, and to
+permit persons to whom the Software is furnished to do so, subject to
+the following conditions:
+
+The above copyright notice and this permission notice shall be
+included in all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
+MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
+NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
+LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
+OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
+WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

README.md

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+# genoset-122 [![Build status](https://travis-ci.org/mathiasbynens/genoset-122.svg?branch=master)](https://travis-ci.org/mathiasbynens/genoset-122) [![Code coverage status](https://coveralls.io/repos/mathiasbynens/genoset-122/badge.svg)](https://coveralls.io/r/mathiasbynens/genoset-122) [![Dependency status](https://gemnasium.com/mathiasbynens/genoset-122.svg)](https://gemnasium.com/mathiasbynens/genoset-122)
+
+This script determines if a genome has an increased risk of baldness as per [gs122](http://www.snpedia.com/index.php/Gs122).
+
+## Compatibility
+
+This genoset is to be used with DNA-JSON. See [the _dna2json_ repository](https://github.com/genomejs/dna2json) for more information.
+
+## Usage
+
+```js
+var isLikelyToGoBald = require('genoset-122');
+var dna = require('./my-dna.json');
+
+console.log(isLikelyToGoBald(dna));
+// → `true` or `false`
+```
+
+## Author
+
+| [![twitter/mathias](https://gravatar.com/avatar/24e08a9ea84deb17ae121074d0f17125?s=70)](https://twitter.com/mathias "Follow @mathias on Twitter") |
+|---|
+| [Mathias Bynens](https://mathiasbynens.be/) |
+
+## License
+
+_genoset-122_ is available under the [MIT](https://mths.be/mit) license.

index.js

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+var gql = require('gql');
+var isMale = require('genoset-male');
+
+module.exports = function(dna) {
+	if (!isMale(dna)) { // This is equivalent to gs145.
+		return false;
+	}
+	var query = gql.and([
+		gql.only('rs6625163', 'A'),
+		gql.or([
+			gql.only('rs1160312', 'A'),
+			gql.exact('rs1160312', 'AG'),
+			gql.and([
+				gql.only('rs201571', 'T'),
+				gql.only('rs6036025', 'G')
+			])
+		])
+	]);
+	return query(dna);
+};

package.json

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+{
+	"name": "genoset-122",
+	"version": "0.0.0",
+	"description": "Determines if a genome has an increased risk of baldness (gs122).",
+	"homepage": "https://mths.be/gs122",
+	"main": "index.js",
+	"keywords": [
+		"bald",
+		"baldness",
+		"dna",
+		"genes",
+		"genetics",
+		"genome",
+		"genoset",
+		"gs122"
+	],
+	"license": "MIT",
+	"author": {
+		"name": "Mathias Bynens",
+		"url": "https://mathiasbynens.be/"
+	},
+	"repository": {
+		"type": "git",
+		"url": "https://github.com/mathiasbynens/genoset-122.git"
+	},
+	"bugs": "https://github.com/mathiasbynens/genoset-122/issues",
+	"files": [
+		"LICENSE-MIT.txt",
+		"index.js"
+	],
+	"scripts": {
+		"test": "mocha tests"
+	},
+	"dependencies": {
+		"genoset-male": "^1.0.0",
+		"gql": "^1.1.0"
+	},
+	"devDependencies": {
+		"coveralls": "^2.11.2",
+		"istanbul": "^0.3.11",
+		"mocha": "^2.2.5",
+		"should": "^6.0.1"
+	}
+}

tests/fixtures/female-1.json

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+{
+	"rs6625163": {
+		"chromosome": "X",
+		"genotype": "AA"
+	},
+	"rs1160312": {
+		"chromosome": 20,
+		"genotype": "AA"
+	}
+}

tests/fixtures/female-2.json

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+{
+	"rs6625163": {
+		"chromosome": "X",
+		"genotype": "AA"
+	},
+	"rs201571": {
+		"chromosome": 20,
+		"genotype": "TT"
+	},
+	"rs6036025": {
+		"chromosome": 20,
+		"genotype": "GG"
+	}
+}

tests/fixtures/male-1.json

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+{
+	"rs2032651": {
+		"chromosome": "Y",
+		"genotype": "D"
+	},
+	"rs9341296": {
+		"chromosome": "Y",
+		"genotype": "C"
+	},
+
+	"rs6625163": {
+		"chromosome": "X",
+		"genotype": "AA"
+	},
+	"rs1160312": {
+		"chromosome": 20,
+		"genotype": "AA"
+	}
+}

tests/fixtures/male-2.json

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+{
+	"rs2032651": {
+		"chromosome": "Y",
+		"genotype": "D"
+	},
+	"rs9341296": {
+		"chromosome": "Y",
+		"genotype": "C"
+	},
+
+	"rs6625163": {
+		"chromosome": "X",
+		"genotype": "AA"
+	},
+	"rs201571": {
+		"chromosome": 20,
+		"genotype": "TT"
+	},
+	"rs6036025": {
+		"chromosome": 20,
+		"genotype": "GG"
+	}
+}

tests/fixtures/male-3.json

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+{
+	"rs2032651": {
+		"chromosome": "Y",
+		"genotype": "D"
+	},
+	"rs9341296": {
+		"chromosome": "Y",
+		"genotype": "C"
+	},
+
+	"rs6625163": {
+		"chromosome": "X",
+		"genotype": "AT"
+	},
+	"rs1160312": {
+		"chromosome": 20,
+		"genotype": "AA"
+	}
+}

tests/fixtures/male-4.json

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+{
+	"rs2032651": {
+		"chromosome": "Y",
+		"genotype": "D"
+	},
+	"rs9341296": {
+		"chromosome": "Y",
+		"genotype": "C"
+	},
+
+	"rs6625163": {
+		"chromosome": "X",
+		"genotype": "AA"
+	},
+	"rs201571": {
+		"chromosome": 20,
+		"genotype": "TT"
+	},
+	"rs6036025": {
+		"chromosome": 20,
+		"genotype": "AA"
+	}
+}

tests/index.js

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+var isLikelyToGoBald = require('../index.js');
+var assert = require('assert');
+require('mocha');
+
+describe('genoset-122', function() {
+	it('should match male genomes that fulfill the criteria', function() {
+		assert.equal(isLikelyToGoBald(require('./fixtures/male-1.json')), true);
+		assert.equal(isLikelyToGoBald(require('./fixtures/male-2.json')), true);
+	});
+	it('should not match a male genome that doesn’t fulfill the criteria', function() {
+		assert.equal(isLikelyToGoBald(require('./fixtures/male-3.json')), false);
+		assert.equal(isLikelyToGoBald(require('./fixtures/male-4.json')), false);
+	});
+	it('should not match a female genome, even if it fulfills all other criteria', function() {
+		assert.equal(isLikelyToGoBald(require('./fixtures/female-1.json')), false);
+		assert.equal(isLikelyToGoBald(require('./fixtures/female-2.json')), false);
+	});
+});