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Python wrapper which builds an initial tree #36

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matsen opened this issue Dec 13, 2016 · 2 comments

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matsen commented Dec 13, 2016

My thought is to just wrap FastTree.

load in partis output, including naive sequence
FastTree -> reroot using nw_utils -> drop root -> linearham

matsen added the ready label

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matsen commented Feb 24, 2017

This should be RAxML, not FastTree, because we need the info file for pt.

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dunleavy005 commented Aug 24, 2018

we're doing bayesian re-weighting using RevBayes trees as input now, no more optimization

dunleavy005 closed this as completed

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