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  1. gctree gctree Public

    GCtree: phylogenetic inference of genotype-collapsed trees

    Python 16 2

  2. sumrep sumrep Public

    Summary statistics for repertoires

    R 16 6

  3. vampire vampire Public

    🧛 Deep generative models for TCR sequences 🧛

    Python 16 4

  4. olmsted olmsted Public

    B-cell repertoire and clonal family tree explorer

    JavaScript 15 4

  5. phippery phippery Public

    Python 14 2

  6. gapml gapml Public

    Python 11 4

Repositories

Showing 10 of 106 repositories
  • dnsm-json-database Public
    matsengrp/dnsm-json-database’s past year of commit activity
    Python 0 0 0 0 Updated Nov 1, 2024
  • larch Public

    Inference and manipulation of history DAGs

    matsengrp/larch’s past year of commit activity
    C++ 2 MIT 2 14 3 Updated Oct 30, 2024
  • usher Public Forked from yatisht/usher

    Ultrafast Sample Placement on Existing Trees

    matsengrp/usher’s past year of commit activity
    C++ 0 MIT 42 1 0 Updated Oct 24, 2024
  • phylostability Public
    matsengrp/phylostability’s past year of commit activity
    Python 1 0 0 0 Updated Oct 1, 2024
  • gctree2-validation-plots Public
    matsengrp/gctree2-validation-plots’s past year of commit activity
    Python 0 0 0 0 Updated Sep 26, 2024
  • bcr-phylo-benchmark Public
    matsengrp/bcr-phylo-benchmark’s past year of commit activity
    Jupyter Notebook 3 GPL-3.0 8 3 1 Updated Sep 20, 2024
  • tex-template Public template
    matsengrp/tex-template’s past year of commit activity
    TeX 2 0 1 0 Updated Sep 17, 2024
  • python-package-template Public template

    A template python package, put together by Jared and Dave

    matsengrp/python-package-template’s past year of commit activity
    0 MIT 0 0 0 Updated Sep 11, 2024
  • gctree Public

    GCtree: phylogenetic inference of genotype-collapsed trees

    matsengrp/gctree’s past year of commit activity
    Python 16 GPL-3.0 2 12 3 Updated Aug 27, 2024
  • transport Public
    matsengrp/transport’s past year of commit activity
    Python 2 0 1 2 Updated Aug 24, 2024
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