PhysiCell_GPU: an OpenACC Acclerated Version of PhysiCell, an Open Source Physics-Based Cell Simulator for 3-D Multicellular Systems.

In this code, we carefully utilize OpenACC, adirective-based programming model to accelerate the diffusion portion in Equation 1 inPhysiCell, a cross-platform agent-based biosimulationframework that has been adopted in cancer infectious diseases and othercomplex biological problem.

Compile uses NVHPC, but you can change it in the Makefile. To build, just type make. The default is using Cuda managed memory.

Original: https://github.com/MathCancer/PhysiCell

Reference: A Ghaffarizadeh, R Heiland, SH Friedman, SM Mumenthaler, and P Macklin, PhysiCell: an Open Source Physics-Based Cell Simulator for Multicellular Systems, PLoS Comput. Biol. 14(2): e1005991, 2018. DOI: 10.1371/journal.pcbi.1005991

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