sbml-merge

Merging SBML files with python 3 libsbml. This project is deprecated, and now part of the functionality of sbmlutils.

Installation

clone repository

git clone https://github.com/matthiaskoenig/sbml-merge.git

setup virtual environment

cd sbml-merge
mkvirtualenv sbml-merge --python=python3
(sbml-merge) pip install -r requirements.txt
(sbml-merge) pip install jupyter jupyterlab

install python kernel

(sbml-merge) python -m ipykernel install --user --name=sbml-merge

start jupyter lab with kernel

(sbml-merge) jupyter lab model_merging.ipynb

Select kernel

Kernel -> Select Kernel -> sbml-merge

Run notebook

Kernel -> Restart & Run all

© 2017 Matthias König.