refactoring parameter fitting

matthiaskoenig · Mar 11, 2021 · 49b1314 · 49b1314
1 parent 390920e
commit 49b1314
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Showing 19 changed files with 27,550 additions and 415 deletions.
diff --git a/reports/fit-report/01_optimization_result.js b/reports/fit-report/01_optimization_result.js
diff --git a/reports/fit-report/01_optimization_result.json b/reports/fit-report/01_optimization_result.json
diff --git a/reports/fit-report/data.json b/reports/fit-report/data.json
@@ -0,0 +1 @@
+data = '[{"name" : "Harry", "age" : "32"}]';
diff --git a/reports/fit-report/index.html b/reports/fit-report/index.html
@@ -2,7 +2,7 @@
 <html lang="en">
   <head>
     <meta charset="utf-8">
-    <title>vue-report</title>
+    <title>Fit report</title>
   </head>
   <body>
     <div id="app"></div>

diff --git a/reports/fit-report/require.js b/reports/fit-report/require.js
diff --git a/reports/fit-report/src/App.vue b/reports/fit-report/src/App.vue
@@ -1,19 +1,23 @@
 <template>
   <div id="app">
    <Report />
+    {{ myJson }}
   </div>
 </template>
 
 <script>
 import Report from "./components/Report";
+import json from './01_optimization_result.json'
 
 export default {
   name: 'app',
   components: {
     Report
   },
   data () {
-    return {}
+    return {
+      myJson: json
+    }
   },
   methods: {}
 }

diff --git a/reports/fit-report/tsconfig.json b/reports/fit-report/tsconfig.json
@@ -7,6 +7,7 @@
     // if using webpack 2+ or rollup, to leverage tree shaking:
     "module": "es2015",
     "moduleResolution": "node",
+    "resolveJsonModule": true,
     "paths": {
       "@/*": [
         "/src/",

diff --git a/src/sbmlsim/fit/README.md b/src/sbmlsim/fit/README.md
diff --git a/src/sbmlsim/fit/__init__.py b/src/sbmlsim/fit/__init__.py
@@ -1,2 +1,6 @@
-"""Package for parameter fitting."""
+"""Package for parameter fitting.
+
+For additional resources see for instance
+https://pyabc.readthedocs.io/en/latest/index.html
+"""
 from .objects import FitMapping, FitData, FitExperiment, FitParameter