Fix #1, documentation of JSON language

matthiaskoenig · Oct 22, 2019 · 5098d0b · 5098d0b
1 parent 1ffba49
commit 5098d0b
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Showing 26 changed files with 2,396 additions and 7 deletions.
diff --git a/docs/notebooks/json_examples/example_1.json b/docs/notebooks/json_examples/example_1.json
@@ -0,0 +1,13 @@
+{
+  "timecourses": [
+    {
+      "start": 0,
+      "end": 60,
+      "steps": 60,
+      "changes": {},
+      "model_changes": {}
+    }
+  ],
+  "selections": null,
+  "reset": true
+}
diff --git a/docs/notebooks/json_examples/example_1.tsv b/docs/notebooks/json_examples/example_1.tsv
diff --git a/docs/notebooks/json_examples/example_2.json b/docs/notebooks/json_examples/example_2.json
@@ -0,0 +1,15 @@
+{
+  "timecourses": [
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+      "end": 60,
+      "steps": 60,
+      "changes": {
+        "n": 5
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+      "model_changes": {}
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+  ],
+  "selections": null,
+  "reset": true
+}
diff --git a/docs/notebooks/json_examples/example_2.tsv b/docs/notebooks/json_examples/example_2.tsv
diff --git a/docs/notebooks/json_examples/example_3.json b/docs/notebooks/json_examples/example_3.json
@@ -0,0 +1,15 @@
+{
+  "timecourses": [
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+      "end": 60,
+      "steps": 60,
+      "changes": {
+        "X": 100
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+      "model_changes": {}
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+  ],
+  "selections": null,
+  "reset": true
+}
diff --git a/docs/notebooks/json_examples/example_3.tsv b/docs/notebooks/json_examples/example_3.tsv
diff --git a/docs/notebooks/json_examples/example_4.json b/docs/notebooks/json_examples/example_4.json
@@ -0,0 +1,15 @@
+{
+  "timecourses": [
+    {
+      "start": 0,
+      "end": 60,
+      "steps": 60,
+      "changes": {
+        "[Y]": 50
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+      "model_changes": {}
+    }
+  ],
+  "selections": null,
+  "reset": true
+}
diff --git a/docs/notebooks/json_examples/example_4.tsv b/docs/notebooks/json_examples/example_4.tsv
diff --git a/docs/notebooks/json_examples/example_5.json b/docs/notebooks/json_examples/example_5.json
@@ -0,0 +1,17 @@
+{
+  "timecourses": [
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+      "steps": 60,
+      "changes": {
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+  "selections": null,
+  "reset": true
+}
diff --git a/docs/notebooks/json_examples/example_5.tsv b/docs/notebooks/json_examples/example_5.tsv
diff --git a/docs/notebooks/json_examples/example_6.json b/docs/notebooks/json_examples/example_6.json
@@ -0,0 +1,33 @@
+{
+  "timecourses": [
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+      "start": 0,
+      "end": 120,
+      "steps": 60,
+      "changes": {
+        "X": 20
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+      "model_changes": {}
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+    {
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+      "steps": 120,
+      "changes": {
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+      "end": 240,
+      "steps": 120,
+      "changes": {
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+      "model_changes": {}
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+  "selections": null,
+  "reset": true
+}
diff --git a/docs/notebooks/json_examples/example_6.tsv b/docs/notebooks/json_examples/example_6.tsv
diff --git a/...ks/json_examples/body19_livertoy_flat.xml → ...notebooks/models/body19_livertoy_flat.xml b/...ks/json_examples/body19_livertoy_flat.xml → ...notebooks/models/body19_livertoy_flat.xml
diff --git a/...notebooks/json_examples/repressilator.xml → docs/notebooks/models/repressilator.xml b/...notebooks/json_examples/repressilator.xml → docs/notebooks/models/repressilator.xml