minor fixes

matthiaskoenig · Nov 15, 2021 · c8cce29 · c8cce29
1 parent ccc27fb
commit c8cce29
Show file tree

Hide file tree

Showing 3 changed files with 2 additions and 2 deletions.
diff --git a/src/sbmlsim/_deprecated/pk/pkpd.py b/src/sbmlsim/_deprecated/pk/pkpd.py
@@ -73,7 +73,6 @@ def get_species_keys(skey, species_ids):
         # use regular expression to find ids
         # This pattern is not very robust !!! FIXME (e.g. blood vs. plasma)
         pattern = r"^[AC][a-z]+(_plasma)*\_{}$".format(skey)
-        # FIXME
 
         match = re.search(pattern, species_id)
         if match:

diff --git a/src/sbmlsim/model/model_roadrunner.py b/src/sbmlsim/model/model_roadrunner.py
@@ -218,7 +218,7 @@ def set_integrator_settings(
                 # tolerances
                 value = min(value, value * min(r.model.getCompartmentVolumes()))
             integrator.setValue(key, value)
-            logger.info(f"Integrator setting: '{key} = {value}'")
+            logger.debug(f"Integrator setting: '{key} = {value}'")
         return integrator
 
     @staticmethod

diff --git a/src/sbmlsim/plot/serialization_matplotlib.py b/src/sbmlsim/plot/serialization_matplotlib.py
@@ -5,6 +5,7 @@
 import numpy as np
 from matplotlib import pyplot as plt
 from matplotlib.figure import Figure as FigureMPL
+from matplotlib.axis import Axis as AxisMPL
 from matplotlib.gridspec import GridSpec
 from sbmlutils import log