The package sismow was developed as part of the OWFSOMM project. The objective of this project is to demonstrate the technical relevance of aerial digital monitoring while ensuring their comparability with observer-based visual monitoring.
The goal of sismow
is to simulate different datasets of aerial
monitoring. To do this, sismow
allows to simulate:
- density maps
- sampling transects
- observation probabilities
With the different functions of this package, it is possible to simulate digital and visual aerial monitoring for different conditions (more or less abundant species, more or less homogeneously distributed in space, more or less discreet…). This allows then to calculate abundances and distributions under different conditions and to calculate intercalibration parameters between the two methods.
You can install the development version of sismow
from
GitHub with:
# install.packages("devtools")
#devtools::install_github("maudqueroue/sismow")
library(sismow)
First, the function simulate_density
allows to create map with
different spatial variation of density.
- homogeneous: same density througout the studied area.
map <- simulate_density(shape_obj = shape_courseulles,
density_type = "uniform")
- gradient : density decreasing from a hotspot that could be placed
on different directions (
gradient_direction
: Center, North, East…). Theamplitude
andwavelength
of the hotspot created can be modulated by the user.
map <- simulate_density(shape_obj = shape_courseulles,
density_type = "gradient",
gradient_direction = "NW",
amplitude = 200,
wavelength = 40000)
- Random: random density. Several hotspots
nb_hotspots
are randomly created with amplitude and wavelength randomly chosen. The maximum value ofamplitude
andwavelength
can be modulated by the user.
map <- simulate_density(shape_obj = shape_courseulles,
density_type = "random",
amplitude = 200,
wavelength = 10000,
nb_hotspots = 15)
The simulate_ind
function allows to simulate an approximate number of
individuals/groups with an inhomogenous Poisson point process according
to the densities provided in the map
object.
- Simulation of
N
= 200 individuals withmean_group_size
= 1:
ind <- simulate_ind(map_obj = map,
mean_group_size = 1,
N = 200)
- Simulation of
N
= 100 groups ofmean_group_size
5 individuals
ind <- simulate_ind(map_obj = map,
mean_group_size = 5,
N = 100)
The function simulate_transects
allows to simulate transects with
different conditions:
- different types of survey design such as parallel, zigzag, crossed zigzag or random transects
- total transect length (approximately)
- angle of the transects
- segmentation of the transects - segments length (approximately)
- parallel transects design with an approximate total line length of 400km:
transects <- simulate_transects(shape_obj = shape_courseulles,
design = "systematic",
line_length = 400000)
- zigzag transects design with an approximate total line length of 600km that are segmentized with a `length of approximatively 2000m per segment.
transects <- simulate_transects(shape_obj = shape_courseulles,
design = "eszigzag",
line_length = 600000,
design_angle = 90,
segmentize = TRUE,
seg_length = 2000)
The function simulate_obs
allows to simulate datasets of observations
according to:
- The individuals/groups simulated on the density map.
- The transect design simulated.
- A detection probability.
To determine the detection probability, the user can choose:
- The form of the detection function : uniform or half-normal
- The maximum distance of observation (truncation)
- The probability of observation at distance 0 (g_zero)
- The effective strip width (esw) for half-normal detection function
- Half normal detection probability equal to 1 at 0 distance with a effective strip half width of 180m.
obs <- simulate_obs(ind_obj = ind,
transect_obj = transects,
key = "hn",
g_zero = 1,
esw = 180)
- Uniform detection probability equal to 1 below distance 200m .
obs <- simulate_obs(ind_obj = ind,
transect_obj = transects,
key = "unif",
g_zero = 1,
truncation = 200)