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| Original file line number | Diff line number | Diff line change |
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| @@ -1,18 +1,15 @@ | ||
| ^vignettes$ | ||
| ^\.buildignore$ | ||
| ^vignettes/siteonly$ | ||
| ^cran-comments\.md$ | ||
| ^CRAN-RELEASE$ | ||
| ^docs$ | ||
| ^_pkgdown\.yml$ | ||
| ^\.travis\.yml$ | ||
| ^.*\.Rproj$ | ||
| ^LICENSE\.md$ | ||
| ^README\.Rmd$ | ||
| ^\.Rproj\.user$ | ||
| ^.*\.Rproj$ | ||
| ^tor\.Rpoj$ | ||
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| ^tmp\.R$ | ||
| ^\.github$ | ||
| ^\.travis\.yml$ | ||
| ^_pkgdown\.yml$ | ||
| ^codecov\.yml$ | ||
| ^cran-comments\.md$ | ||
| ^csv1\.csv$ | ||
| ^csv2\.csv$ | ||
| ^\.github$ | ||
| ^tor\.Rpoj$ | ||
| ^vignettes$ | ||
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| ^vignettes/articles$ |
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| @@ -0,0 +1 @@ | ||
| *.html |
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| @@ -0,0 +1,89 @@ | ||
| on: | ||
| push: | ||
| branches: | ||
| - master | ||
| pull_request: | ||
| branches: | ||
| - master | ||
|
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| name: R-CMD-check | ||
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| jobs: | ||
| R-CMD-check: | ||
| runs-on: ${{ matrix.config.os }} | ||
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| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | ||
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| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| config: | ||
| - {os: windows-latest, r: '3.6'} | ||
| - {os: macOS-latest, r: '3.6'} | ||
| - {os: macOS-latest, r: 'devel'} | ||
| - {os: ubuntu-16.04, r: '3.2', cran: "https://demo.rstudiopm.com/all/__linux__/xenial/latest"} | ||
| - {os: ubuntu-16.04, r: '3.3', cran: "https://demo.rstudiopm.com/all/__linux__/xenial/latest"} | ||
| - {os: ubuntu-16.04, r: '3.4', cran: "https://demo.rstudiopm.com/all/__linux__/xenial/latest"} | ||
| - {os: ubuntu-16.04, r: '3.5', cran: "https://demo.rstudiopm.com/all/__linux__/xenial/latest"} | ||
| - {os: ubuntu-16.04, r: '3.6', cran: "https://demo.rstudiopm.com/all/__linux__/xenial/latest"} | ||
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| env: | ||
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | ||
| CRAN: ${{ matrix.config.cran }} | ||
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| steps: | ||
| - uses: actions/checkout@v1 | ||
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| - uses: r-lib/actions/setup-r@master | ||
| with: | ||
| r-version: ${{ matrix.config.r }} | ||
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| - uses: r-lib/actions/setup-pandoc@master | ||
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| - name: Query dependencies | ||
| run: | | ||
| install.packages('remotes') | ||
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), "depends.Rds", version = 2) | ||
| shell: Rscript {0} | ||
|
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| - name: Cache R packages | ||
| if: runner.os != 'Windows' | ||
| uses: actions/cache@v1 | ||
| with: | ||
| path: ${{ env.R_LIBS_USER }} | ||
| key: ${{ runner.os }}-r-${{ matrix.config.r }}-${{ hashFiles('depends.Rds') }} | ||
| restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}- | ||
|
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| - name: Install system dependencies | ||
| if: runner.os == 'Linux' | ||
| env: | ||
| RHUB_PLATFORM: linux-x86_64-ubuntu-gcc | ||
| run: | | ||
| Rscript -e "remotes::install_github('r-hub/sysreqs')" | ||
| sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))") | ||
| sudo -s eval "$sysreqs" | ||
| - name: Install dependencies | ||
| run: | | ||
| library(remotes) | ||
| deps <- readRDS("depends.Rds") | ||
| deps[["installed"]] <- vapply(deps[["package"]], remotes:::local_sha, character(1)) | ||
| update(deps) | ||
| remotes::install_cran("rcmdcheck") | ||
| shell: Rscript {0} | ||
|
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| - name: Check | ||
| run: rcmdcheck::rcmdcheck(args = "--no-manual", error_on = "warning", check_dir = "check") | ||
| shell: Rscript {0} | ||
|
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| - name: Upload check results | ||
| if: failure() | ||
| uses: actions/upload-artifact@master | ||
| with: | ||
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | ||
| path: check | ||
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| - name: Test coverage | ||
| if: matrix.config.os == 'macOS-latest' && matrix.config.r == '3.6' | ||
| run: covr::codecov(token = "${{secrets.CODECOV_TOKEN}}") | ||
| shell: Rscript {0} |
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|---|---|---|
| @@ -0,0 +1,24 @@ | ||
| on: | ||
| push: | ||
| branches: master | ||
|
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| name: Pkgdown | ||
|
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| jobs: | ||
| pkgdown: | ||
| runs-on: macOS-latest | ||
| steps: | ||
| - uses: actions/checkout@master | ||
| - uses: r-lib/actions/setup-r@master | ||
| - uses: r-lib/actions/setup-pandoc@master | ||
| - name: Install dependencies | ||
| run: | | ||
| install.packages("remotes") | ||
| remotes::install_deps(dependencies = TRUE) | ||
| remotes::install_dev("pkgdown") | ||
| shell: Rscript {0} | ||
| - name: Install package | ||
| run: R CMD INSTALL . | ||
| - name: Deploy package | ||
| run: pkgdown::deploy_to_branch(new_process = FALSE) | ||
| shell: Rscript {0} |
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,52 @@ | ||
| on: | ||
| issue_comment: | ||
| types: [created] | ||
| name: Commands | ||
| jobs: | ||
| document: | ||
| if: startsWith(github.event.comment.body, '/document') | ||
| name: document | ||
| runs-on: macOS-latest | ||
| steps: | ||
| - uses: actions/checkout@v1 | ||
| - uses: r-lib/actions/pr-fetch@master | ||
| with: | ||
| repo-token: ${{ secrets.GITHUB_TOKEN }} | ||
| - uses: r-lib/actions/setup-r@master | ||
| - name: Install dependencies | ||
| run: Rscript -e 'install.packages(c("remotes", "roxygen2"))' -e 'remotes::install_deps(dependencies = TRUE)' | ||
| - name: Document | ||
| run: Rscript -e 'roxygen2::roxygenise()' | ||
| - name: commit | ||
| run: | | ||
| git add man/\* NAMESPACE | ||
| git commit -m 'Document' | ||
| - uses: r-lib/actions/pr-push@master | ||
| with: | ||
| repo-token: ${{ secrets.GITHUB_TOKEN }} | ||
| style: | ||
| if: startsWith(github.event.comment.body, '/style') | ||
| name: style | ||
| runs-on: macOS-latest | ||
| steps: | ||
| - uses: actions/checkout@master | ||
| - uses: r-lib/actions/pr-fetch@master | ||
| with: | ||
| repo-token: ${{ secrets.GITHUB_TOKEN }} | ||
| - uses: r-lib/actions/setup-r@master | ||
| - name: Install dependencies | ||
| run: Rscript -e 'install.packages("styler")' | ||
| - name: Style | ||
| run: Rscript -e 'styler::style_pkg()' | ||
| - name: commit | ||
| run: | | ||
| git add \*.R | ||
| git commit -m 'Style' | ||
| - uses: r-lib/actions/pr-push@master | ||
| with: | ||
| repo-token: ${{ secrets.GITHUB_TOKEN }} | ||
| # A mock job just to ensure we have a successful build status | ||
| finish: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - run: true |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,12 @@ | ||
| comment: false | ||
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| coverage: | ||
| status: | ||
| project: | ||
| default: | ||
| target: auto | ||
| threshold: 1% | ||
| patch: | ||
| default: | ||
| target: auto | ||
| threshold: 1% |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,10 +1,11 @@ | ||
| codecov | ||
| Codecov | ||
| csv | ||
| fs | ||
| io | ||
| lifecycle | ||
| onment | ||
| ORCID | ||
| rds | ||
| readr | ||
| rio | ||
| rlang | ||
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