arw_mrna

Adaptive Random Walk for the mRNA design problem

Depends on the ViennaRNA package: pip install ViennaRNA Tested using ViennaRNA==2.6.4

Run run_awalk.py from the src/ directory to design an mRNA sequence Example usage: python3 run_awalk.py --aa_seq=MVSKGEELFTGVVPILVELDGDVNGH --verbose --stability=efe --cai_threshold=0.9