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Update README.md
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removed log tranformation (already performed by rma)
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maxibor committed Aug 10, 2017
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Expand Up @@ -165,14 +165,13 @@ colnames(resmin)= cname
resmin = as.data.frame(resmin)
```

#### Aggregating the PROBES matching the same ENTREZ accession number by averaging them and applying a log transformation
#### Aggregating the PROBES matching the same ENTREZ accession number by averaging them

``` r
result = aggregate(. ~ ENTREZID, resmin, mean)
result$ENTREZID = levels(as.factor(as.character(resmin$ENTREZID)))
rownames(result) = result$ENTREZID
result = result[,-1]
result = log(result)
```

#### Visualizing in boxplot to check normalization
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