version 0.40

maxibor · Sep 22, 2020 · be55fe4 · be55fe4
1 parent 3da182b
commit be55fe4
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Showing 3 changed files with 5 additions and 2 deletions.
diff --git a/README.md b/README.md
@@ -25,16 +25,18 @@ pip install pydamage
 Using pip
 
 ```bash
-pip install git+ssh://git@github.com/maxibor/pydamage.git
+pip install git+ssh://git@github.com/maxibor/pydamage.git@dev
 ```
 
 By cloning in a dedicated conda environment
 
 ```bash
 git clone git@github.com:maxibor/pydamage.git
 cd pydamage
+git checkout dev
 conda env create -f environment.yml
 conda activate pydamage
+pip install -e .
 ```
 
 

diff --git a/pydamage/__init__.py b/pydamage/__init__.py
@@ -1,2 +1,2 @@
-__version__ = '0.30'
+__version__ = "0.40"
 from pydamage.main import analyze
diff --git a/pydamage/cli.py b/pydamage/cli.py
@@ -61,6 +61,7 @@ def cli(no_args_is_help=True, **kwargs):
     Homepage & Documentation: github.com/maxibor/pydamage
 
     BAM: path to BAM/SAM/CRAM alignment file
+    FASTA: path to reference FASTA file
     """
     analyze(**kwargs)