fix lowercase in normalization variable name

maxibor · Jul 9, 2019 · fb5ac07 · fb5ac07
1 parent 0f75504
commit fb5ac07
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/sourcepredict b/sourcepredict
@@ -146,7 +146,7 @@ if __name__ == "__main__":
 
     print("Step 2: Checking for source proportion")
     sm = sourcemap(source=SOURCES, sink=SINK, labels=LABELS,
-                   norm_method=NORMALIZATION, threads=THREADS)
+                   norm_method=normalization, threads=THREADS)
     print(f"\tComputing {distance_method} distance on {tax_rank} rank")
     sm.compute_distance(distance_method=distance_method, rank=tax_rank)
     print(f"\t{embed_method} embedding in {DIM} dimension{utils.plural(DIM)}")

diff --git a/sourcepredictlib/utils.py b/sourcepredictlib/utils.py
@@ -96,7 +96,7 @@ def check_norm(method):
     methods = ['RLE', 'SUBSAMPLE', 'GMPR']
     method = method.upper()
     if method not in methods:
-        print("Please check the normalization method (RLE or Subsample)")
+        print("Please check the normalization method (GMPR, RLE, or Subsample)")
         sys.exit(1)
     else:
         return(method)