Mark various entities as obsolete

flowcell/admin.py

@@ -1,6 +1,6 @@
 from django.contrib import admin
 from flowcell.models import Sequencer, Flowcell
-
+from django.conf import settings
 
 class LaneInline(admin.TabularInline):
     model = Flowcell.lanes.through
@@ -41,7 +41,23 @@ def has_add_permission(self, request):
 
 @admin.register(Sequencer)
 class SequencerAdmin(admin.ModelAdmin):
-    list_display = ('name', 'lanes', 'lane_capacity',)
+    list_display = ('name', 'lanes', 'lane_capacity','obsolete_name')
+    actions = ('mark_as_obsolete', 'mark_as_non_obsolete',)
+
+    def mark_as_obsolete(self, request, queryset):
+        queryset.update(obsolete=settings.OBSOLETE)
+
+    mark_as_obsolete.short_description = "Mark sequencer as obsolete"
+
+    def mark_as_non_obsolete(self, request, queryset):
+        queryset.update(obsolete=settings.NON_OBSOLETE)
+
+    mark_as_non_obsolete.short_description = "Mark sequencer as non-obsolete"
+
+    def obsolete_name(self, obj):
+        return "Non-obsolete" if obj.obsolete == settings.NON_OBSOLETE else "Obsolete"
+
+    obsolete_name.short_description = "STATUS"
 
 
 @admin.register(Flowcell)

flowcell/models.py

@@ -10,6 +10,7 @@ class Sequencer(models.Model):
     name = models.CharField('Name', max_length=50)
     lanes = models.PositiveSmallIntegerField('Number of Lanes')
     lane_capacity = models.PositiveSmallIntegerField('Lane Capacity')
+    obsolete = models.PositiveIntegerField("Obsolete", default=1)
 
     def __str__(self):
         return self.name

flowcell/views.py

@@ -29,6 +29,7 @@
     PoolListSerializer,
     PoolInfoSerializer,
 )
+from django.conf import settings
 
 ReadLength = apps.get_model('library_sample_shared', 'ReadLength')
 IndexI7 = apps.get_model('library_sample_shared', 'IndexI7')
@@ -75,7 +76,7 @@
 
 class SequencerViewSet(viewsets.ReadOnlyModelViewSet):
     """ Get the list of sequencers. """
-    queryset = Sequencer.objects.all()
+    queryset = Sequencer.objects.all().filter(obsolete=settings.NON_OBSOLETE)
     serializer_class = SequencerSerializer
 
 

index_generator/admin.py

@@ -2,6 +2,7 @@
 from django_admin_listfilter_dropdown.filters import RelatedDropdownFilter
 
 from .models import Pool, PoolSize
+from django.conf import settings
 
 
 class BaseInline(admin.TabularInline):
@@ -53,4 +54,20 @@ class PoolAdmin(admin.ModelAdmin):
 
 @admin.register(PoolSize)
 class PoolSizeAdmin(admin.ModelAdmin):
-    pass
+    list_display = ('name', 'obsolete_name')
+    actions = ('mark_as_obsolete', 'mark_as_non_obsolete',)
+
+    def mark_as_obsolete(self, request, queryset):
+        queryset.update(obsolete=settings.OBSOLETE)
+
+    mark_as_obsolete.short_description = "Mark pool size as obsolete"
+
+    def mark_as_non_obsolete(self, request, queryset):
+        queryset.update(obsolete=settings.NON_OBSOLETE)
+
+    mark_as_non_obsolete.short_description = "Mark pool size as non-obsolete"
+
+    def obsolete_name(self, obj):
+        return "Non-obsolete" if obj.obsolete == settings.NON_OBSOLETE else "Obsolete"
+
+    obsolete_name.short_description = "STATUS"

index_generator/models.py

@@ -7,17 +7,21 @@
 from library.models import Library
 from sample.models import Sample
 
-
 class PoolSize(models.Model):
     multiplier = models.PositiveSmallIntegerField('Multiplier', default=1)
     size = models.PositiveSmallIntegerField('Size')
+    obsolete = models.PositiveIntegerField("Obsolete", default=1)
 
     class Meta:
         ordering = ['multiplier', 'size']
 
     def __str__(self):
         return f'{self.multiplier}x{self.size}'
 
+    @property
+    def name(self):
+        return f'{self.multiplier}x{self.size}'
+
 
 class Pool(DateTimeMixin):
     name = models.CharField('Name', max_length=100, blank=True)

index_generator/views.py

@@ -20,6 +20,7 @@
     IndexGeneratorLibrarySerializer,
     IndexGeneratorSampleSerializer,
 )
+from django.conf import settings
 
 Request = apps.get_model('request', 'Request')
 IndexI7 = apps.get_model('library_sample_shared', 'IndexI7')
@@ -32,7 +33,7 @@
 
 class PoolSizeViewSet(viewsets.ReadOnlyModelViewSet):
     """ Get the list of pool sizes. """
-    queryset = PoolSize.objects.all()
+    queryset = PoolSize.objects.all().filter(obsolete=settings.NON_OBSOLETE)
     serializer_class = PoolSizeSerializer