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obsolete protocols
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risufaj committed Nov 5, 2018
1 parent 28bcf2a commit d623a26
Showing 1 changed file with 30 additions and 15 deletions.
45 changes: 30 additions & 15 deletions library_sample_shared/fixtures/library_protocols.json
Original file line number Diff line number Diff line change
Expand Up @@ -11,7 +11,8 @@
"input_requirements": "-",
"typical_application": "-",
"comments": "",
"status":1
"status":1,
"obsolete":1
}
},
{
Expand All @@ -26,7 +27,8 @@
"input_requirements": "-",
"typical_application": "-",
"comments": "",
"status":1
"status":1,
"obsolete":1
}
},
{
Expand All @@ -41,7 +43,8 @@
"input_requirements": "500 - 1 µg of fragmented DNA",
"typical_application": "ChIP-Seq",
"comments": "",
"status":1
"status":1,
"obsolete":1
}
},
{
Expand All @@ -56,7 +59,8 @@
"input_requirements": "1 µg high molecular weight genomic DANN",
"typical_application": "WGS",
"comments": "",
"status":1
"status":1,
"obsolete":1
}
},
{
Expand All @@ -71,7 +75,8 @@
"input_requirements": "50 ng high molecular weight genomic DNA",
"typical_application": "ATAC-Seq",
"comments": "can be used for: large/complex Genome sequencing",
"status":1
"status":1,
"obsolete":1
}
},
{
Expand All @@ -86,7 +91,8 @@
"input_requirements": "1 ng high molecular weight DNA",
"typical_application": "ATAC-Seq",
"comments": "can be used for: small Genome, Amplicons, Plasmide, ds-cDNA sequencing",
"status":1
"status":1,
"obsolete":1
}
},
{
Expand All @@ -101,7 +107,8 @@
"input_requirements": "50-100 ng high molecular weight genomic DNA",
"typical_application": "WGBS",
"comments": "",
"status":1
"status":1,
"obsolete":1
}
},
{
Expand All @@ -116,7 +123,8 @@
"input_requirements": "NA",
"typical_application": "Amplicon-Seq",
"comments": "",
"status":1
"status":1,
"obsolete":1
}
},
{
Expand All @@ -131,7 +139,8 @@
"input_requirements": "100 ng - 1 µg total RNA, RIN/RQN: 8",
"typical_application": "stranded mRNA-Seq",
"comments": "previously isolated mRNA can also serve as starting material",
"status":1
"status":1,
"obsolete":1
}
},
{
Expand All @@ -146,7 +155,8 @@
"input_requirements": "100 ng - 1 µg total RNA, RIN/RQN: 8",
"typical_application": "stranded RNA-Seq",
"comments": "Oligos designed to target Mouse/Rat/Human, can be used for other organisms drosophila/zebrafish",
"status":1
"status":1,
"obsolete":1
}
},
{
Expand All @@ -161,7 +171,8 @@
"input_requirements": "10 pg - 10 ng total RNA, RIN/RQN: 8",
"typical_application": "mRNA-Seq",
"comments": "",
"status":1
"status":1,
"obsolete":1
}
},
{
Expand All @@ -176,7 +187,8 @@
"input_requirements": "1 µg total RNA, RIN/RQN: 8",
"typical_application": "small RNA-Seq",
"comments": "",
"status":1
"status":1,
"obsolete":1
}
},
{
Expand Down Expand Up @@ -206,7 +218,8 @@
"input_requirements": "100 ng - 1 µg total RNA, RIN/RQN: 8",
"typical_application": "RNA-Seq",
"comments": "alternative to TruSeq stranded total RNA kit, alternate rRNA removal technology, no strand specificity",
"status":1
"status":1,
"obsolete":1
}
},
{
Expand All @@ -221,7 +234,8 @@
"input_requirements": "NA",
"typical_application": "NA",
"comments": "",
"status":1
"status":1,
"obsolete":1
}
},
{
Expand All @@ -236,7 +250,8 @@
"input_requirements": "-",
"typical_application": "-",
"comments": "Not a protocol. It's a special entry used for the Preparation Costs calculation for libraries.",
"status":1
"status":1,
"obsolete":1
}
}
]

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