Merge pull request #716 from kashyapchhatbar/patch-1

Fixed --fragmentLength argument in computeGCBias rule
maxplanck-ie · Oct 26, 2020 · 3ca8345 · 3ca8345
2 parents 1f8fe1f + a429c3e
commit 3ca8345
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/snakePipes/shared/rules/deepTools_qc.snakefile b/snakePipes/shared/rules/deepTools_qc.snakefile
@@ -188,7 +188,7 @@ rule computeGCBias:
         genome_size = int(genome_size),
         genome_2bit = genome_2bit,
         blacklist = "--blackListFileName {}".format(blacklist_bed) if blacklist_bed else "",
-        median_fragment_length = "" if pairedEnd else "-fragmentLength {}".format(fragmentLength),
+        median_fragment_length = "" if pairedEnd else "--fragmentLength {}".format(fragmentLength),
         sampleSize = downsample if downsample and downsample < 10000000 else 10000000
     log:
         out = "deepTools_qc/logs/computeGCBias.{sample}.filtered.out",