Merge pull request #876 from maxplanck-ie/config_KS

Config ks
maxplanck-ie · Jan 19, 2023 · 460ef77 · 460ef77
2 parents 3cc38e9 + 3588d3d
commit 460ef77
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diff --git a/docs/content/News.rst b/docs/content/News.rst
@@ -6,6 +6,7 @@ snakePipes 2.7.2
 * STAR version has been updated to 2.7.10b. 2.7.10a was returning segmentation fault on MAC.
 * STAR command has been updated. Now, STAR itself offers a command line option for processing input files.
 * Put a cap on python version for the deeptools env. The current version of deeptools is not supporting the newer python versions and some tools fail.
+* Update default condaDir.
 
 snakePipes 2.7.1
 ----------------

diff --git a/snakePipes/shared/defaults.yaml b/snakePipes/shared/defaults.yaml
@@ -7,7 +7,7 @@
 # permitted here.
 ################################################################################
 #
-snakemakeOptions: ' --use-conda --conda-prefix /package/anaconda3/envs/ '
+snakemakeOptions: ' --use-conda --conda-prefix /package/mamba/envs/ '
 organismsDir: 'shared/organisms'
 clusterConfig: 'shared/cluster.yaml'
 tempDir: /data/extended/