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David Koppstein committed Apr 18, 2023
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Expand Up @@ -188,7 +188,7 @@ using the **deepTools_qc** mode. It's a very useful add-on with any of the other
.. note:: Since most deeptools functions require an aligned (BAM) file, the deepTools_qc mode will additionally perform the alignment of the fastq files. However this would not interfere with operations of the other modes.

"threePrimeSeq"
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**threePrimeSeq** uses a pipeline developed by the Hilgers lab to annotate and
count clusters of reads mapping to three prime ends of genes using
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