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Update News.rst (#972)
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katsikora committed Jan 25, 2024
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Expand Up @@ -3,7 +3,6 @@ snakePipes News

snakePipes 2.8.0
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* Moved SalmonIndex creation from mRNAseq and scRNAseq to createIndices.
* Changed the behaviour of snakePipes createEnvs - it is no longer possible to set condaEnvDir with this function. It is required to set it with snakePipes config beforhand, instead. To ingore what's in the defaults.yaml and overwrite the condaEnvDir value with default system conda prefix, use '--autodetectCondaEnvDir'.
* Snakemake options in the defaults.yaml are now an empty string. The required arguments '--use-conda --conda-prefix' have been directly added to the command string. condaEnvDir is parsed from defaults.yaml, requiring running snakePipes config first.
Expand All @@ -20,6 +19,11 @@ snakePipes 2.8.0
* an 'on success' file is touched in the output directory when a workflow is finished successfully
* fuzzywuzzy deprecated in favor for thefuzz


snakePipes 2.7.3
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* Fixes #884 by creating an additional conda env for DSS. Build tests are now run with strict channel priority.

snakePipes 2.7.2
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* STAR version has been updated to 2.7.10b. 2.7.10a was returning segmentation fault on MAC.
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