Filtergtf #869
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Filtergtf #869
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gene -> transcript -> exon order is also not always followed.
katsikora
approved these changes
Jan 17, 2023
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some organism annotations have
;in their value fields, which breaks gtf_to_files.One example is:
description "phosphoribosylaminoimidazole carboxylase; phosphoribosylaminoimidazolesuccinocarboxamide synthase L homeolog"re.split ignores these 'stringed' delimiters.
some organisms can also have spaces in gene name/symbols, breaking read.table (the defaults delimits to all whitespaces).