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[katsikora]

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[katsikora]

I had to drop the speedup version as it resulted in the package not being included in the build and snakePipes erroring out later on.

[WardDeb]

Does this also warrant the same change in the action env ? (snakePipesEnvCI.yml)

[katsikora]

Does this also warrant the same change in the action env ? (snakePipesEnvCI.yml)

Good question... The tests ran through, so I guess this can be now left as is. I wonder if it's the difference in python version, or in the solver. The GHA workflow uses micromamba, I'm using conda build locally.
There is also a difference in the channels, I'll test briefly if adding defaults would fix the build issue.
Thanks for your help 🙏

[katsikora]

Running conda build -c conda-forge -c bioconda -c defaults conda-recipe instead of conda build -c conda-forge -c bioconda conda-recipe doesn't solve the issue, I still get ModuleNotFoundError: No module named 'thefuzz' Tests failed for snakepipes-2.8.0-py_0.tar.bz2 .

I'll go ahead with the PR then.