missing run.sh?

[hwreeves-USGS]

I tried starting NWTOPT using the command lines you sent. Seems like things start up but then hang.
I'm getting an error in the logfile:

INFO (hyperopt.mongoexp): job exception: [Errno 2] No such file or directory: 'run.sh'

Do I need to copy run.sh to my project directory? I have it in the main NWTOPT directory.

Also, I changed the port so I wouldn't clash with other runs (to 27020) in the command lines and nwtopt.sub.

I didn't run nwtopt.sh manually anywhere, just

mongodb/bin/mongod --dbpath mongodb/db --bind_ip 130.11.177.99 --port 27020
 
condor_submit nwtopt.sub
 
cd NWT_SUBMIT/NWTOPT_FILES; python optimize_NWT.py --ip 130.11.177.99 --port 27020 --key badger_19F --trials 3000

Am I missing something?

[maxwnewcomer]

You aren't missing anything, this is likely a bug, but if you could, check two things. 1) run.sh is in the main directory and filled out with the run command desired 2) in the logs/outputs/ directory, find a run from the cluster you started and check that run.sh is in the files listed after the ls command. The master branch might be behind a fix that I made locally when I encountered this issue. Sorry for the buggyness :/

[maxwnewcomer]

I am currently in class, but will look at this later when I get back to my work computer.

[hwreeves-USGS]

I don't see a logs/outputs directory - so that is something. Hope classes are going well, I'll catch up with you later - I have calls until mid afternoon. HWR Howard W. Reeves Acting Chief Science Officer, Groundwater and Watershed Modeling Team Lead USGS Upper Midwest Water Science Center 5840 Enterprise Drive Lansing, Michigan 48911 517-887-8914

…

________________________________ From: Max Newcomer ***@***.***> Sent: Wednesday, September 8, 2021 11:00 AM To: maxwnewcomer/NWTOPT ***@***.***> Cc: Reeves, Howard W ***@***.***>; Author ***@***.***> Subject: [EXTERNAL] Re: [maxwnewcomer/NWTOPT] missing run.sh? (#4) This email has been received from outside of DOI - Use caution before clicking on links, opening attachments, or responding. You aren't missing anything, this is likely a bug, but if you could, check two things. 1) run.sh is in the main directory and filled out with the run command desired 2) in the logs/outputs/ directory, find a run from the cluster you started and check that run.sh is in the files listed after the ls command. The master branch might be behind a fix that I made locally when I encountered this issue. Sorry for the buggyness :/ — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub<https://gcc02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fmaxwnewcomer%2FNWTOPT%2Fissues%2F4%23issuecomment-915316865&data=04%7C01%7Chwreeves%40usgs.gov%7Cfb74c0f944c1469234de08d972d9f4ba%7C0693b5ba4b184d7b9341f32f400a5494%7C0%7C0%7C637667102707912854%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=5NPJ783fzwMc3T5nWhV3teP1wMd5CNYzmrGbudBLYwo%3D&reserved=0>, or unsubscribe<https://gcc02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FABMHEL36FABMWISF45DQVPLUA53CLANCNFSM5DU642RA&data=04%7C01%7Chwreeves%40usgs.gov%7Cfb74c0f944c1469234de08d972d9f4ba%7C0693b5ba4b184d7b9341f32f400a5494%7C0%7C0%7C637667102707922805%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=ZJ67lg949%2BbktkEoQuVhd0ozjrzDBNXzdSxMqSLoTGc%3D&reserved=0>. Triage notifications on the go with GitHub Mobile for iOS<https://gcc02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fapps.apple.com%2Fapp%2Fapple-store%2Fid1477376905%3Fct%3Dnotification-email%26mt%3D8%26pt%3D524675&data=04%7C01%7Chwreeves%40usgs.gov%7Cfb74c0f944c1469234de08d972d9f4ba%7C0693b5ba4b184d7b9341f32f400a5494%7C0%7C0%7C637667102707922805%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=sInutLYVmDnnju8AS4btDyWsLFvFcaUJDvsY2Ndxs2Q%3D&reserved=0> or Android<https://gcc02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fplay.google.com%2Fstore%2Fapps%2Fdetails%3Fid%3Dcom.github.android%26referrer%3Dutm_campaign%253Dnotification-email%2526utm_medium%253Demail%2526utm_source%253Dgithub&data=04%7C01%7Chwreeves%40usgs.gov%7Cfb74c0f944c1469234de08d972d9f4ba%7C0693b5ba4b184d7b9341f32f400a5494%7C0%7C0%7C637667102707932763%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C1000&sdata=lqEvZr69d4ANykGQwZGmxyFcJ9zgTVbICTYxYsdDeQo%3D&reserved=0>.