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When I downloaded the project and ran samparser.py, I got the error that that "the Namespace object has no attribute infile" (line 3800 of samparser.py at if args.infile == args.outfile:).
The problem seems to be that infile is a member of the parsed arguments of the io_parser rather than the argparser, and the problem seemed to be fixed by changing args = argparser.parse_args()
to args = io_parser.parse_args()
(It seemed to me that io_parser was in fact supposed to be the main parser, but I don't know enough to know whether that's true)
The text was updated successfully, but these errors were encountered:
The issue was that while infile was inherited correctly by both the subparsers, none of them were invoked when samparser.py was invoked with no subcommand.
When I downloaded the project and ran samparser.py, I got the error that that "the
Namespace
object has no attributeinfile
" (line 3800 of samparser.py atif args.infile == args.outfile:
).The problem seems to be that
infile
is a member of the parsed arguments of theio_parser
rather than theargparser
, and the problem seemed to be fixed by changingargs = argparser.parse_args()
to
args = io_parser.parse_args()
(It seemed to me that
io_parser
was in fact supposed to be the main parser, but I don't know enough to know whether that's true)The text was updated successfully, but these errors were encountered: