update notebooks

- hide cross section figure cell - add trailing semi colons to suppress output - remove last cell linking to next nb
mbakker7 · Feb 14, 2024 · e813936 · e813936
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diff --git a/docs/04pumpingtests/0_synthetic_data.ipynb b/docs/04pumpingtests/0_synthetic_data.ipynb
@@ -338,8 +338,7 @@
     "plt.legend()\n",
     "plt.xlabel(\"time (d)\")\n",
     "plt.ylabel(\"drawdown (m)\")\n",
-    "fig.suptitle(\"Drawdown model and observations with noise: $\\sigma$ = 0.02\")\n",
-    "plt.show()"
+    "fig.title(\"Drawdown model and observations with noise: $\\sigma$ = 0.02\");"
    ]
   },
   {
@@ -369,8 +368,7 @@
     "plt.legend()\n",
     "plt.xlabel(\"time (d)\")\n",
     "plt.ylabel(\"drawdown (m)\")\n",
-    "fig.suptitle(\"Drawdown model and observations with noise: $\\sigma$ = 0.05\")\n",
-    "plt.show()"
+    "fig.title(\"Drawdown model and observations with noise: $\\sigma$ = 0.05\");"
    ]
   },
   {
@@ -584,7 +582,7 @@
     "plt.title(\n",
     "    \"Ttim analysis with synthetic data, Calibrated model with $\\sigma$ = 0.02 errors at 30 m.\"\n",
     ")\n",
-    "plt.legend()"
+    "plt.legend();"
    ]
   },
   {
@@ -744,7 +742,7 @@
     "plt.xlabel(\"time (d)\")\n",
     "plt.ylabel(\"drawdown (m)\")\n",
     "plt.title(\"ttim analysis with synthetic data, sig=0.02 errors at 90 m.\")\n",
-    "plt.legend(loc=\"best\")"
+    "plt.legend(loc=\"best\");"
    ]
   },
   {
@@ -920,7 +918,7 @@
     "plt.xlabel(\"time (d)\")\n",
     "plt.ylabel(\"drawdown (m)\")\n",
     "plt.title(\"ttim analysis with synthetic data without errors.\")\n",
-    "plt.legend()"
+    "plt.legend();"
    ]
   },
   {
@@ -1073,7 +1071,7 @@
     "plt.xlabel(\"time (d)\")\n",
     "plt.ylabel(\"drawdown (m)\")\n",
     "plt.title(\"ttim analysis with synthetic data and errors with sig=0.02\")\n",
-    "plt.legend()"
+    "plt.legend();"
    ]
   },
   {
@@ -1226,7 +1224,7 @@
     "plt.xlabel(\"time (d)\")\n",
     "plt.ylabel(\"drawdown (m)\")\n",
     "plt.title(\"ttim analysis with synthetic data and errors with sig=0.05\")\n",
-    "plt.legend()"
+    "plt.legend();"
    ]
   },
   {
@@ -1252,17 +1250,8 @@
     "* Initiated a TTim model instance using the `Model` class\n",
     "* Sampled observation data from the model and defined the synthetic data by adding noise.\n",
     "* Calibrated the model with the `Calibrate` class using one and two calibration wells\n",
-    "* Inspected the calibration performance\n",
-    "\n",
-    "Next Example:\n",
-    "\n",
-    "* Pumping test analysis of a confined aquifer: [Example 1 - Pumping Test of Confined Aquifer](confined1_oude_korendijk.ipynb)\n"
+    "* Inspected the calibration performance"
    ]
-  },
-  {
-   "cell_type": "markdown",
-   "metadata": {},
-   "source": []
   }
  ],
  "metadata": {

diff --git a/docs/04pumpingtests/confined1_oude_korendijk.ipynb b/docs/04pumpingtests/confined1_oude_korendijk.ipynb
@@ -32,7 +32,9 @@
    "cell_type": "code",
    "execution_count": 1,
    "metadata": {
-    "tags": []
+    "tags": [
+     "hide-input"
+    ]
    },
    "outputs": [
     {
@@ -145,7 +147,7 @@
     "ax.text(x=30, y=0.75, s=\"P30\", fontsize=\"large\")\n",
     "ax.text(x=90, y=0.75, s=\"P90\", fontsize=\"large\")\n",
     "ax.set_xlim([-10, 100])\n",
-    "ax.set_ylim([-25, 3])"
+    "ax.set_ylim([-25, 3]);"
    ]
   },
   {
@@ -1686,7 +1688,7 @@
     "        label=name,\n",
     "    )\n",
     "plt.legend()\n",
-    "plt.suptitle(\"Error bar plot of calibrated hydraulic conductivities\")\n",
+    "plt.title(\"Error bar plot of calibrated hydraulic conductivities\")\n",
     "plt.ylabel(\"K [m/d]\")\n",
     "plt.xlabel(\"Calibration Dataset\")\n",
     "plt.grid()"

diff --git a/docs/04pumpingtests/confined2_grindley.ipynb b/docs/04pumpingtests/confined2_grindley.ipynb
@@ -35,7 +35,9 @@
     "jupyter": {
      "source_hidden": true
     },
-    "tags": []
+    "tags": [
+     "hide-input"
+    ]
    },
    "outputs": [
     {
@@ -138,7 +140,7 @@
     "ax.set_ylim([-20, 3])\n",
     "ax.set_xlabel(\"Distance [ft]\")\n",
     "ax.set_ylabel(\"Relative height [ft]\")\n",
-    "ax.set_title(\"Conceptual Model - Grindley Example\")"
+    "ax.set_title(\"Conceptual Model - Grindley Example\");"
    ]
   },
   {
@@ -448,8 +450,8 @@
     "plt.semilogx(t1, h1, \".\", label=\"obs well 1\")  # Plotting Observed points\n",
     "plt.xlabel(\"time [d]\")\n",
     "plt.ylabel(\"drawdown [m]\")\n",
-    "plt.suptitle(\"Model Prediction vs Observations - Calibrated Model 1\")\n",
-    "plt.legend()"
+    "plt.title(\"Model Prediction vs Observations - Calibrated Model 1\")\n",
+    "plt.legend();"
    ]
   },
   {
@@ -482,10 +484,10 @@
     "plt.semilogx(t2, h2, \".\", label=\"well 3\")  # Plotting Observed points\n",
     "plt.xlabel(\"time [d]\")\n",
     "plt.ylabel(\"drawdown [m]\")\n",
-    "plt.suptitle(\n",
+    "plt.title(\n",
     "    \"Model Prediction vs Observations - Calibrated Model 1, Results in the Pumping Well\"\n",
     ")\n",
-    "plt.legend()"
+    "plt.legend();"
    ]
   },
   {
@@ -588,8 +590,8 @@
     "plt.semilogx(t2, h2, \".\", label=\"well 3 observations\")\n",
     "plt.xlabel(\"time [d]\")\n",
     "plt.ylabel(\"drawdown [m]\")\n",
-    "plt.suptitle(\"Model Prediction vs Observations - Calibration 2\")\n",
-    "plt.legend()"
+    "plt.title(\"Model Prediction vs Observations - Calibration 2\")\n",
+    "plt.legend();"
    ]
   },
   {
@@ -791,8 +793,8 @@
     "plt.semilogx(t2, h2, \".\", label=\"well3\")\n",
     "plt.xlabel(\"time [d]\")\n",
     "plt.ylabel(\"drawdown [m]\")\n",
-    "plt.suptitle(\"Model Prediction vs Observations - Calibration 3\")\n",
-    "plt.legend()"
+    "plt.title(\"Model Prediction vs Observations - Calibration 3\")\n",
+    "plt.legend();"
    ]
   },
   {
@@ -1059,8 +1061,8 @@
     "plt.semilogx(t2, h2, \".\", label=\"well3\")\n",
     "plt.xlabel(\"time [d]\")\n",
     "plt.ylabel(\"drawdown [m]\")\n",
-    "plt.suptitle(\"Model Prediction vs Observations - Calibration 4\")\n",
-    "plt.legend()"
+    "plt.title(\"Model Prediction vs Observations - Calibration 4\")\n",
+    "plt.legend();"
    ]
   },
   {
@@ -1549,10 +1551,10 @@
     "    markersize=12,\n",
     ")\n",
     "# plt.legend()\n",
-    "plt.suptitle(\"Error bar plot of calibrated hydraulic conductivities\")\n",
+    "plt.title(\"Error bar plot of calibrated hydraulic conductivities\")\n",
     "plt.ylabel(\"K [m/d]\")\n",
     "plt.ylim([36, 40])\n",
-    "plt.xlabel(\"Model\")"
+    "plt.xlabel(\"Model\");"
    ]
   },
   {

diff --git a/docs/04pumpingtests/confined3_sioux.ipynb b/docs/04pumpingtests/confined3_sioux.ipynb
@@ -29,7 +29,9 @@
     "jupyter": {
      "source_hidden": true
     },
-    "tags": []
+    "tags": [
+     "hide-input"
+    ]
    },
    "outputs": [
     {
@@ -161,7 +163,7 @@
     "ax.text(x=400, y=0.75, s=\"P400\", fontsize=\"large\")\n",
     "ax.set_xlim([-50, 450])\n",
     "ax.set_ylim([-55, 3])\n",
-    "ax.set_title(\"Conceptual Model - Sioux Example\")"
+    "ax.set_title(\"Conceptual Model - Sioux Example\");"
    ]
   },
   {
@@ -458,7 +460,7 @@
     "plt.xlabel(\"time [d]\")\n",
     "plt.ylabel(\"drawdown [m]\")\n",
     "plt.legend()\n",
-    "plt.suptitle(\"Calibration Results vs Observations - Model 1\")"
+    "plt.title(\"Calibration Results vs Observations - Model 1\");"
    ]
   },
   {
@@ -860,7 +862,7 @@
     "plt.xlabel(\"time [d]\")\n",
     "plt.ylabel(\"drawdown [m]\")\n",
     "plt.legend()\n",
-    "plt.suptitle(\"Model Calibration Results - Model 2\")"
+    "plt.title(\"Model Calibration Results - Model 2\");"
    ]
   },
   {
@@ -1115,10 +1117,10 @@
     "    markersize=12,\n",
     ")\n",
     "# plt.legend()\n",
-    "plt.suptitle(\"Error bar plot of calibrated hydraulic conductivities\")\n",
+    "plt.title(\"Error bar plot of calibrated hydraulic conductivities\")\n",
     "plt.ylabel(\"K [m/d]\")\n",
     "plt.ylim([278, 289])\n",
-    "plt.xlabel(\"Model\")"
+    "plt.xlabel(\"Model\");"
    ]
   },
   {

diff --git a/docs/04pumpingtests/confined4_schroth.ipynb b/docs/04pumpingtests/confined4_schroth.ipynb
@@ -30,7 +30,9 @@
    "cell_type": "code",
    "execution_count": 14,
    "metadata": {
-    "tags": []
+    "tags": [
+     "hide-input"
+    ]
    },
    "outputs": [
     {
@@ -163,7 +165,7 @@
     "ax.set_ylim([-55, 3])\n",
     "ax.set_xlabel(\"Distance [m]\")\n",
     "ax.set_ylabel(\"Relative height [m]\")\n",
-    "ax.set_title(\"Conceptual Model - Schroth Example\")"
+    "ax.set_title(\"Conceptual Model - Schroth Example\");"
    ]
   },
   {
@@ -452,7 +454,7 @@
     "plt.semilogx(t2, hm2_0[-1], label=\"ttim model - obs_well\")\n",
     "plt.xlabel(\"time [d]\")\n",
     "plt.ylabel(\"head [m]\")\n",
-    "plt.legend()"
+    "plt.legend();"
    ]
   },
   {
@@ -704,7 +706,7 @@
     "plt.xlabel(\"time [d]\")\n",
     "plt.ylabel(\"drawdown [m]\")\n",
     "plt.legend()\n",
-    "plt.suptitle(\"Model Results - One Aquifer + Well Parameters\")"
+    "plt.title(\"Model Results - One Aquifer + Well Parameters\");"
    ]
   },
   {
@@ -1049,7 +1051,7 @@
     "plt.xlabel(\"time [d]\")\n",
     "plt.ylabel(\"drawdown [m]\")\n",
     "plt.legend()\n",
-    "plt.suptitle(\"Model Results - Two Aquifer Model\")"
+    "plt.title(\"Model Results - Two Aquifer Model\");"
    ]
   },
   {
@@ -1392,8 +1394,8 @@
     "plt.semilogx(t2, hm2_3[-1], label=\"ttim model - observation well\")\n",
     "plt.xlabel(\"time [d]\")\n",
     "plt.ylabel(\"drawdown [m]\")\n",
-    "plt.suptitle(\"Model Results - Two Aquifers + Well Parameters\")\n",
-    "plt.legend()"
+    "plt.title(\"Model Results - Two Aquifers + Well Parameters\")\n",
+    "plt.legend();"
    ]
   },
   {
@@ -1648,8 +1650,8 @@
     "plt.semilogx(t2, hm2_4[-1], label=\"ttim model - observation well\")\n",
     "plt.xlabel(\"time [d]\")\n",
     "plt.ylabel(\"drawdown [m]\")\n",
-    "plt.suptitle(\"Model Results - Two Aquifer Model + Well Parameters\")\n",
-    "plt.legend()"
+    "plt.title(\"Model Results - Two Aquifer Model + Well Parameters\")\n",
+    "plt.legend();"
    ]
   },
   {
@@ -1898,7 +1900,7 @@
     ")\n",
     "\n",
     "plt.legend()\n",
-    "plt.suptitle(\"Error bar plot of calibrated hydraulic conductivities\")\n",
+    "plt.title(\"Error bar plot of calibrated hydraulic conductivities\")\n",
     "plt.ylabel(\"K [m/d]\")\n",
     "# plt.ylim([278,289])\n",
     "plt.xlabel(\"Model\")"

diff --git a/docs/04pumpingtests/confined5_nevada.ipynb b/docs/04pumpingtests/confined5_nevada.ipynb
@@ -34,7 +34,9 @@
     "jupyter": {
      "source_hidden": true
     },
-    "tags": []
+    "tags": [
+     "hide-input"
+    ]
    },
    "outputs": [
     {
@@ -146,7 +148,6 @@
     "    ax.set_xlabel(\"Distance [m]\")\n",
     "    ax.set_ylabel(\"Relative height [m]\")\n",
     "    ax.set_title(\"Conceptual Model - Nevada Example\")\n",
-    "    plt.show()\n",
     "\n",
     "\n",
     "conc_confined5()"
@@ -621,9 +622,8 @@
     "plt.semilogx(t2, hm2[-1], label=\"TTim UE-25a#1\")\n",
     "plt.xlabel(\"time [d]\")\n",
     "plt.ylabel(\"drawdown [m]\")\n",
-    "plt.suptitle(\"Model Results - Simulation 1\")\n",
-    "plt.legend()\n",
-    "plt.show()"
+    "plt.title(\"Model Results - Simulation 1\")\n",
+    "plt.legend();"
    ]
   },
   {
@@ -890,7 +890,7 @@
     "plt.semilogx(t2, ht2[-1], label=\"TTim UE-25a#1\")\n",
     "plt.xlabel(\"time [d]\")\n",
     "plt.ylabel(\"drawdown [m]\")\n",
-    "plt.suptitle(\"Model Results - Simulation 1\")\n",
+    "plt.title(\"Model Results - Simulation 1\")\n",
     "plt.legend()\n",
     "plt.show()"
    ]
@@ -1136,7 +1136,7 @@
     ")\n",
     "\n",
     "plt.legend()\n",
-    "plt.suptitle(\"Error bar plot of calibrated hydraulic conductivities\")\n",
+    "plt.title(\"Error bar plot of calibrated hydraulic conductivities\")\n",
     "plt.ylabel(\"K [m/d]\")\n",
     "# plt.ylim([278,289])\n",
     "plt.xlabel(\"Model\")"

diff --git a/docs/04pumpingtests/leaky1_dalem.ipynb b/docs/04pumpingtests/leaky1_dalem.ipynb
diff --git a/docs/04pumpingtests/leaky2_hardixveld.ipynb b/docs/04pumpingtests/leaky2_hardixveld.ipynb
diff --git a/docs/04pumpingtests/leaky3_texashill.ipynb b/docs/04pumpingtests/leaky3_texashill.ipynb
diff --git a/docs/04pumpingtests/slug1_pratt_county.ipynb b/docs/04pumpingtests/slug1_pratt_county.ipynb
diff --git a/docs/04pumpingtests/slug2_falling_head.ipynb b/docs/04pumpingtests/slug2_falling_head.ipynb
diff --git a/docs/04pumpingtests/slug3_multiwell.ipynb b/docs/04pumpingtests/slug3_multiwell.ipynb
diff --git a/docs/04pumpingtests/slug4_dawsonville.ipynb b/docs/04pumpingtests/slug4_dawsonville.ipynb
diff --git a/docs/04pumpingtests/unconfined1_vennebulten.ipynb b/docs/04pumpingtests/unconfined1_vennebulten.ipynb
diff --git a/docs/04pumpingtests/unconfined2_moench.ipynb b/docs/04pumpingtests/unconfined2_moench.ipynb