Updated docu to v5.0

mcuntz · Feb 7, 2023 · 2daa00d · 2daa00d
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diff --git a/CHANGELOG.rst b/CHANGELOG.rst
@@ -5,7 +5,7 @@ All notable changes after its initial release in May 2020 (v2.0) are documented
 in this file.
 
 v5.0 (Jan 2023)
-    * Dropped support for Python 3.6 vbecause cannot test it anymore.
+    * Dropped support for Python 3.6 because cannot test it anymore.
     * Add timecolumns and ftimeformat to config and post-processing file in
       examples.
     * Use 90% of ustar if no threshold found also for seasonout.

diff --git a/docs/html/.buildinfo b/docs/html/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: bf80ab8688a99ccb5a7dbbf1de43d922
+config: a229c28f73769ec9b4c577ab465ca4f4
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/docs/html/_modules/hesseflux/gapfill.html b/docs/html/_modules/hesseflux/gapfill.html
@@ -5,15 +5,13 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>hesseflux.gapfill &#8212; hesseflux 4.6.dev1 documentation</title>
+    <title>hesseflux.gapfill &#8212; hesseflux 5.1.dev0 documentation</title>
     <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
     <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
     <link rel="stylesheet" type="text/css" href="../../_static/css/custom.css" />
     <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/_sphinx_javascript_frameworks_compat.js"></script>
     <script src="../../_static/doctools.js"></script>
+    <script src="../../_static/sphinx_highlight.js"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
 
@@ -81,7 +79,7 @@ <h1>Source code for hesseflux.gapfill</h1><div class="highlight"><pre>
             <span class="n">sw_dev</span><span class="o">=</span><span class="mf">50.</span><span class="p">,</span> <span class="n">ta_dev</span><span class="o">=</span><span class="mf">2.5</span><span class="p">,</span> <span class="n">vpd_dev</span><span class="o">=</span><span class="mf">5.</span><span class="p">,</span>
             <span class="n">longgap</span><span class="o">=</span><span class="mi">60</span><span class="p">,</span> <span class="n">fullday</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">undef</span><span class="o">=-</span><span class="mi">9999</span><span class="p">,</span> <span class="n">ddof</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span>
             <span class="n">err</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">errmean</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">verbose</span><span class="o">=</span><span class="mi">0</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    Fill gaps of flux data from Eddy covariance measurements</span>
 <span class="sd">    or estimate flux uncertainties</span>
 
@@ -840,11 +838,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2009-2022, Matthias Cuntz.
+      &copy;2009-2023, Matthias Cuntz.
 
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 5.1.1</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="http://sphinx-doc.org/">Sphinx 6.1.3</a>
+      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.13</a>
 
     </div>
 

diff --git a/docs/html/_modules/hesseflux/madspikes.html b/docs/html/_modules/hesseflux/madspikes.html
@@ -5,15 +5,13 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>hesseflux.madspikes &#8212; hesseflux 4.6.dev1 documentation</title>
+    <title>hesseflux.madspikes &#8212; hesseflux 5.1.dev0 documentation</title>
     <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
     <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
     <link rel="stylesheet" type="text/css" href="../../_static/css/custom.css" />
     <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/_sphinx_javascript_frameworks_compat.js"></script>
     <script src="../../_static/doctools.js"></script>
+    <script src="../../_static/sphinx_highlight.js"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
 
@@ -77,7 +75,7 @@ <h1>Source code for hesseflux.madspikes</h1><div class="highlight"><pre>
               <span class="n">nscan</span><span class="o">=</span><span class="mi">15</span><span class="o">*</span><span class="mi">48</span><span class="p">,</span> <span class="n">nfill</span><span class="o">=</span><span class="mi">1</span><span class="o">*</span><span class="mi">48</span><span class="p">,</span>
               <span class="n">z</span><span class="o">=</span><span class="mi">7</span><span class="p">,</span> <span class="n">deriv</span><span class="o">=</span><span class="mi">2</span><span class="p">,</span> <span class="n">swthr</span><span class="o">=</span><span class="mf">10.</span><span class="p">,</span>
               <span class="n">plot</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    Spike detection using a moving median absolute difference filter</span>
 
 <span class="sd">    Used with Eddy vovariance data in Papale et al. (Biogeosciences, 2006).</span>
@@ -356,11 +354,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2009-2022, Matthias Cuntz.
+      &copy;2009-2023, Matthias Cuntz.
 
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 5.1.1</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="http://sphinx-doc.org/">Sphinx 6.1.3</a>
+      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.13</a>
 
     </div>
 

diff --git a/docs/html/_modules/hesseflux/nee2gpp.html b/docs/html/_modules/hesseflux/nee2gpp.html
@@ -5,15 +5,13 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>hesseflux.nee2gpp &#8212; hesseflux 4.6.dev1 documentation</title>
+    <title>hesseflux.nee2gpp &#8212; hesseflux 5.1.dev0 documentation</title>
     <link rel="stylesheet" type="text/css" href="../../_static/pygments.css" />
     <link rel="stylesheet" type="text/css" href="../../_static/alabaster.css" />
     <link rel="stylesheet" type="text/css" href="../../_static/css/custom.css" />
     <script data-url_root="../../" id="documentation_options" src="../../_static/documentation_options.js"></script>
-    <script src="../../_static/jquery.js"></script>
-    <script src="../../_static/underscore.js"></script>
-    <script src="../../_static/_sphinx_javascript_frameworks_compat.js"></script>
     <script src="../../_static/doctools.js"></script>
+    <script src="../../_static/sphinx_highlight.js"></script>
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" />
 
@@ -83,7 +81,7 @@ <h1>Source code for hesseflux.nee2gpp</h1><div class="highlight"><pre>
 <span class="c1"># ----------------------------------------------------------------------</span>
 <div class="viewcode-block" id="nee2gpp"><a class="viewcode-back" href="../../nee2gpp.html#hesseflux.nee2gpp.nee2gpp">[docs]</a><span class="k">def</span> <span class="nf">nee2gpp</span><span class="p">(</span><span class="n">dfin</span><span class="p">,</span> <span class="n">flag</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">isday</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">date</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">timeformat</span><span class="o">=</span><span class="s1">&#39;%Y-%m-</span><span class="si">%d</span><span class="s1"> %H:%M:%S&#39;</span><span class="p">,</span> <span class="n">colhead</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span>
             <span class="n">undef</span><span class="o">=-</span><span class="mi">9999</span><span class="p">,</span> <span class="n">method</span><span class="o">=</span><span class="s1">&#39;reichstein&#39;</span><span class="p">,</span> <span class="n">nogppnight</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">swthr</span><span class="o">=</span><span class="mf">10.</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    Calculate photosynthesis (GPP) and ecosystem respiration (RECO)</span>
 <span class="sd">    from Eddy covariance CO2 flux data.</span>
 
@@ -338,7 +336,7 @@ <h1>Source code for hesseflux.nee2gpp</h1><div class="highlight"><pre>
 
 <span class="c1"># ----------------------------------------------------------------------</span>
 <span class="k">def</span> <span class="nf">_nee2gpp_falge</span><span class="p">(</span><span class="n">df</span><span class="p">,</span> <span class="n">ff</span><span class="p">,</span> <span class="n">isday</span><span class="p">,</span> <span class="n">undef</span><span class="o">=-</span><span class="mi">9999</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    Calculate photosynthesis (GPP) and ecosystem respiration (RECO) from</span>
 <span class="sd">    original Eddy flux data, using a fit of Reco vs. temperature to all</span>
 <span class="sd">    nighttime data [1]_, in order to calculate Reco and then GPP = Reco - NEE.</span>
@@ -457,7 +455,7 @@ <h1>Source code for hesseflux.nee2gpp</h1><div class="highlight"><pre>
 
 <span class="c1"># ----------------------------------------------------------------------</span>
 <span class="k">def</span> <span class="nf">_nee2gpp_reichstein</span><span class="p">(</span><span class="n">df</span><span class="p">,</span> <span class="n">ff</span><span class="p">,</span> <span class="n">isday</span><span class="p">,</span> <span class="n">undef</span><span class="o">=-</span><span class="mi">9999</span><span class="p">,</span> <span class="n">nogppnight</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    Calculate photosynthesis (GPP) and ecosystem respiration (RECO) from</span>
 <span class="sd">    original Eddy flux data, using several fits of Reco vs. temperature of</span>
 <span class="sd">    nighttime data over the season, as in Reichstein et al. (2005) [2]_, in</span>
@@ -713,7 +711,7 @@ <h1>Source code for hesseflux.nee2gpp</h1><div class="highlight"><pre>
 
 <span class="c1"># ----------------------------------------------------------------------</span>
 <span class="k">def</span> <span class="nf">_nee2gpp_lasslop</span><span class="p">(</span><span class="n">df</span><span class="p">,</span> <span class="n">ff</span><span class="p">,</span> <span class="n">isday</span><span class="p">,</span> <span class="n">undef</span><span class="o">=-</span><span class="mi">9999</span><span class="p">,</span> <span class="n">nogppnight</span><span class="o">=</span><span class="kc">False</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;</span>
 <span class="sd">    Calculate photosynthesis (GPP) and ecosystem respiration (RECO) from</span>
 <span class="sd">    original Eddy flux data, using the daytime method of Lasslop et al. (2010)</span>
 <span class="sd">    [3]_, in order to calculate Reco and then GPP = Reco - NEE.</span>
@@ -1120,11 +1118,11 @@ <h3 id="searchlabel">Quick search</h3>
       <div class="clearer"></div>
     </div>
     <div class="footer">
-      &copy;2009-2022, Matthias Cuntz.
+      &copy;2009-2023, Matthias Cuntz.
 
       |
-      Powered by <a href="http://sphinx-doc.org/">Sphinx 5.1.1</a>
-      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+      Powered by <a href="http://sphinx-doc.org/">Sphinx 6.1.3</a>
+      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.13</a>
 
     </div>