Changed to sphinx_book_theme for documentation

mcuntz · Nov 18, 2023 · 7bc56f4 · 7bc56f4
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diff --git a/CHANGELOG.rst b/CHANGELOG.rst
@@ -1,7 +1,10 @@
 Changelog
 ---------
 
-v2.1 (??? 2023)
+v2.1 (Nov 2023)
+    * Changed to sphinx_book_theme for documentation.
+    * Correct all tests.
+    * Check if outin is Iterable even if inp is not in `array2input`.
     * Split ncread and ncinfo in individual files.
     * Rename readnetcdf file to ncread.
     * Check if scalar is number in array2input.

diff --git a/docs/html/.buildinfo b/docs/html/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 86fdf8fa392b9ead894b7aaabea012aa
+config: 6c1d106b423113e7195f69db541363fe
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/docs/html/_modules/index.html b/docs/html/_modules/index.html
diff --git a/docs/html/_modules/pyjams/air_humidity.html b/docs/html/_modules/pyjams/air_humidity.html
diff --git a/docs/html/_modules/pyjams/alpha_equ_h2o.html b/docs/html/_modules/pyjams/alpha_equ_h2o.html
diff --git a/docs/html/_modules/pyjams/alpha_kin_h2o.html b/docs/html/_modules/pyjams/alpha_kin_h2o.html
diff --git a/docs/html/_modules/pyjams/argsort.html b/docs/html/_modules/pyjams/argsort.html
diff --git a/docs/html/_modules/pyjams/class_datetime.html b/docs/html/_modules/pyjams/class_datetime.html
diff --git a/docs/html/_modules/pyjams/closest.html b/docs/html/_modules/pyjams/closest.html
diff --git a/docs/html/_modules/pyjams/color/color.html b/docs/html/_modules/pyjams/color/color.html
diff --git a/docs/html/_modules/pyjams/date2date.html b/docs/html/_modules/pyjams/date2date.html
diff --git a/docs/html/_modules/pyjams/division.html b/docs/html/_modules/pyjams/division.html
diff --git a/docs/html/_modules/pyjams/fgui.html b/docs/html/_modules/pyjams/fgui.html
diff --git a/docs/html/_modules/pyjams/fsread.html b/docs/html/_modules/pyjams/fsread.html
diff --git a/docs/html/_modules/pyjams/functions/fit_functions.html b/docs/html/_modules/pyjams/functions/fit_functions.html
diff --git a/docs/html/_modules/pyjams/functions/general_functions.html b/docs/html/_modules/pyjams/functions/general_functions.html
diff --git a/docs/html/_modules/pyjams/functions/logistic_function.html b/docs/html/_modules/pyjams/functions/logistic_function.html
diff --git a/docs/html/_modules/pyjams/functions/opti_test_functions.html b/docs/html/_modules/pyjams/functions/opti_test_functions.html
diff --git a/docs/html/_modules/pyjams/functions/sa_test_functions.html b/docs/html/_modules/pyjams/functions/sa_test_functions.html
diff --git a/docs/html/_modules/pyjams/gridcellarea.html b/docs/html/_modules/pyjams/gridcellarea.html
diff --git a/docs/html/_modules/pyjams/kernel_regression.html b/docs/html/_modules/pyjams/kernel_regression.html
diff --git a/docs/html/_modules/pyjams/mad.html b/docs/html/_modules/pyjams/mad.html
diff --git a/docs/html/_modules/pyjams/mcplot.html b/docs/html/_modules/pyjams/mcplot.html
diff --git a/docs/html/_modules/pyjams/means.html b/docs/html/_modules/pyjams/means.html
diff --git a/docs/html/_modules/pyjams/morris_method.html b/docs/html/_modules/pyjams/morris_method.html
diff --git a/docs/html/_modules/pyjams/ncinfo.html b/docs/html/_modules/pyjams/ncinfo.html
diff --git a/docs/html/_modules/pyjams/ncio/netcdfio.html b/docs/html/_modules/pyjams/ncio/netcdfio.html
diff --git a/docs/html/_modules/pyjams/ncread.html b/docs/html/_modules/pyjams/ncread.html
diff --git a/docs/html/_modules/pyjams/npyio.html b/docs/html/_modules/pyjams/npyio.html
diff --git a/docs/html/_modules/pyjams/pack.html b/docs/html/_modules/pyjams/pack.html
diff --git a/docs/html/_modules/pyjams/position.html b/docs/html/_modules/pyjams/position.html
diff --git a/docs/html/_modules/pyjams/romanliterals.html b/docs/html/_modules/pyjams/romanliterals.html
diff --git a/docs/html/_modules/pyjams/sce.html b/docs/html/_modules/pyjams/sce.html
diff --git a/docs/html/_modules/pyjams/screening.html b/docs/html/_modules/pyjams/screening.html
diff --git a/docs/html/_modules/pyjams/str2tex.html b/docs/html/_modules/pyjams/str2tex.html
diff --git a/docs/html/_modules/pyjams/tee.html b/docs/html/_modules/pyjams/tee.html
diff --git a/docs/html/_modules/pyjams/text2plot.html b/docs/html/_modules/pyjams/text2plot.html
diff --git a/docs/html/_sources/air_humidity.rst.txt → docs/html/_sources/air_humidity.rst b/docs/html/_sources/air_humidity.rst.txt → docs/html/_sources/air_humidity.rst
diff --git a/docs/html/_sources/alpha_equ_h2o.rst.txt → docs/html/_sources/alpha_equ_h2o.rst b/docs/html/_sources/alpha_equ_h2o.rst.txt → docs/html/_sources/alpha_equ_h2o.rst
diff --git a/docs/html/_sources/alpha_kin_h2o.rst.txt → docs/html/_sources/alpha_kin_h2o.rst b/docs/html/_sources/alpha_kin_h2o.rst.txt → docs/html/_sources/alpha_kin_h2o.rst
diff --git a/docs/html/_sources/api.rst.txt → docs/html/_sources/api.rst b/docs/html/_sources/api.rst.txt → docs/html/_sources/api.rst
diff --git a/docs/html/_sources/argsort.rst.txt → docs/html/_sources/argsort.rst b/docs/html/_sources/argsort.rst.txt → docs/html/_sources/argsort.rst
diff --git a/.../html/_sources/array_manipulation.rst.txt → docs/html/_sources/array_manipulation.rst b/.../html/_sources/array_manipulation.rst.txt → docs/html/_sources/array_manipulation.rst
diff --git a/docs/html/_sources/ascii_files.rst.txt → docs/html/_sources/ascii_files.rst b/docs/html/_sources/ascii_files.rst.txt → docs/html/_sources/ascii_files.rst
diff --git a/docs/html/_sources/authors.rst.txt → docs/html/_sources/authors.rst b/docs/html/_sources/authors.rst.txt → docs/html/_sources/authors.rst
diff --git a/docs/html/_sources/changelog.rst.txt → docs/html/_sources/changelog.rst b/docs/html/_sources/changelog.rst.txt → docs/html/_sources/changelog.rst
diff --git a/docs/html/_sources/class_datetime.rst.txt → docs/html/_sources/class_datetime.rst b/docs/html/_sources/class_datetime.rst.txt → docs/html/_sources/class_datetime.rst
diff --git a/docs/html/_sources/closest.rst.txt → docs/html/_sources/closest.rst b/docs/html/_sources/closest.rst.txt → docs/html/_sources/closest.rst
diff --git a/...ml/_sources/color.brewer_palettes.rst.txt → docs/html/_sources/color.brewer_palettes.rst b/...ml/_sources/color.brewer_palettes.rst.txt → docs/html/_sources/color.brewer_palettes.rst
diff --git a/docs/html/_sources/color.color.rst.txt → docs/html/_sources/color.color.rst b/docs/html/_sources/color.color.rst.txt → docs/html/_sources/color.color.rst
diff --git a/...ources/color.mathematica_palettes.rst.txt → ...l/_sources/color.mathematica_palettes.rst b/...ources/color.mathematica_palettes.rst.txt → ...l/_sources/color.mathematica_palettes.rst
diff --git a/.../html/_sources/color.ncl_palettes.rst.txt → docs/html/_sources/color.ncl_palettes.rst b/.../html/_sources/color.ncl_palettes.rst.txt → docs/html/_sources/color.ncl_palettes.rst
diff --git a/...ml/_sources/color.oregon_palettes.rst.txt → docs/html/_sources/color.oregon_palettes.rst b/...ml/_sources/color.oregon_palettes.rst.txt → docs/html/_sources/color.oregon_palettes.rst
diff --git a/docs/html/_sources/color.rst.txt → docs/html/_sources/color.rst b/docs/html/_sources/color.rst.txt → docs/html/_sources/color.rst
diff --git a/.../_sources/color.sron2012_palettes.rst.txt → ...html/_sources/color.sron2012_palettes.rst b/.../_sources/color.sron2012_palettes.rst.txt → ...html/_sources/color.sron2012_palettes.rst
diff --git a/...html/_sources/color.sron_palettes.rst.txt → docs/html/_sources/color.sron_palettes.rst b/...html/_sources/color.sron_palettes.rst.txt → docs/html/_sources/color.sron_palettes.rst
diff --git a/.../html/_sources/color.ufz_palettes.rst.txt → docs/html/_sources/color.ufz_palettes.rst b/.../html/_sources/color.ufz_palettes.rst.txt → docs/html/_sources/color.ufz_palettes.rst
diff --git a/docs/html/_sources/const.const.rst.txt → docs/html/_sources/const.const.rst b/docs/html/_sources/const.const.rst.txt → docs/html/_sources/const.const.rst
diff --git a/docs/html/_sources/const.rst.txt → docs/html/_sources/const.rst b/docs/html/_sources/const.rst.txt → docs/html/_sources/const.rst
diff --git a/docs/html/_sources/contents.rst.txt → docs/html/_sources/contents.rst b/docs/html/_sources/contents.rst.txt → docs/html/_sources/contents.rst
diff --git a/docs/html/_sources/contributing.rst.txt → docs/html/_sources/contributing.rst b/docs/html/_sources/contributing.rst.txt → docs/html/_sources/contributing.rst
diff --git a/docs/html/_sources/data_processing.rst.txt → docs/html/_sources/data_processing.rst b/docs/html/_sources/data_processing.rst.txt → docs/html/_sources/data_processing.rst
diff --git a/docs/html/_sources/date2date.rst.txt → docs/html/_sources/date2date.rst b/docs/html/_sources/date2date.rst.txt → docs/html/_sources/date2date.rst
diff --git a/docs/html/_sources/date_time.rst.txt → docs/html/_sources/date_time.rst b/docs/html/_sources/date_time.rst.txt → docs/html/_sources/date_time.rst
diff --git a/docs/html/_sources/division.rst.txt → docs/html/_sources/division.rst b/docs/html/_sources/division.rst.txt → docs/html/_sources/division.rst
diff --git a/docs/html/_sources/fgui.rst.txt → docs/html/_sources/fgui.rst b/docs/html/_sources/fgui.rst.txt → docs/html/_sources/fgui.rst
diff --git a/docs/html/_sources/fsread.rst.txt → docs/html/_sources/fsread.rst b/docs/html/_sources/fsread.rst.txt → docs/html/_sources/fsread.rst
diff --git a/.../_sources/functions.fit_functions.rst.txt → ...html/_sources/functions.fit_functions.rst b/.../_sources/functions.fit_functions.rst.txt → ...html/_sources/functions.fit_functions.rst
diff --git a/...urces/functions.general_functions.rst.txt → .../_sources/functions.general_functions.rst b/...urces/functions.general_functions.rst.txt → .../_sources/functions.general_functions.rst
diff --git a/...urces/functions.logistic_function.rst.txt → .../_sources/functions.logistic_function.rst b/...urces/functions.logistic_function.rst.txt → .../_sources/functions.logistic_function.rst
diff --git a/...ces/functions.opti_test_functions.rst.txt → ...sources/functions.opti_test_functions.rst b/...ces/functions.opti_test_functions.rst.txt → ...sources/functions.opti_test_functions.rst
diff --git a/docs/html/_sources/functions.rst.txt → docs/html/_sources/functions.rst b/docs/html/_sources/functions.rst.txt → docs/html/_sources/functions.rst
diff --git a/...urces/functions.sa_test_functions.rst.txt → .../_sources/functions.sa_test_functions.rst b/...urces/functions.sa_test_functions.rst.txt → .../_sources/functions.sa_test_functions.rst
diff --git a/docs/html/_sources/gridcellarea.rst.txt → docs/html/_sources/gridcellarea.rst b/docs/html/_sources/gridcellarea.rst.txt → docs/html/_sources/gridcellarea.rst
diff --git a/docs/html/_sources/grids_polygons.rst.txt → docs/html/_sources/grids_polygons.rst b/docs/html/_sources/grids_polygons.rst.txt → docs/html/_sources/grids_polygons.rst
diff --git a/docs/html/_sources/index.rst.txt → docs/html/_sources/index.rst b/docs/html/_sources/index.rst.txt → docs/html/_sources/index.rst
@@ -100,9 +100,9 @@ Functions and modules (alphabetical)
      - Short description
    * - :func:`~pyjams.text2plot.abc2plot`
      - Write a, B, iii), ... on a plot
-   * - :func:`~pyjams.alpha_equ_h2o`
+   * - :func:`~pyjams.alpha_equ_h2o.alpha_equ_h2o`
      - Equilibrium fractionation between liquid water and vapour
-   * - :func:`~pyjams.alpha_kin_h2o`
+   * - :func:`~pyjams.alpha_kin_h2o.alpha_kin_h2o`
      - Kinetic fractionation of molecular diffusion of water vapour
    * - :func:`~pyjams.argsort.argmax`
      - Wrapper for numpy.argmax, numpy.ma.argmax, and max for Python
@@ -113,7 +113,7 @@ Functions and modules (alphabetical)
    * - :func:`~pyjams.argsort.argsort`
      - Wrapper for numpy.argsort, numpy.ma.argsort, and sorted for Python
        iterables
-   * - :func:`~pyjams.closest`
+   * - :func:`~pyjams.closest.closest`
      - Index in array which entry is closest to a given number
    * - :mod:`~pyjams.color`
      - Collection of color palettes and continuous color maps
@@ -145,13 +145,13 @@ Functions and modules (alphabetical)
    * - :func:`~pyjams.division.div`
      - Divide two arrays, return 'otherwise' if division by 0,
        same as `division`
-   * - :func:`~pyjams.eair2mrair`
+   * - :func:`~pyjams.air_humidity.eair2mrair`
      - Mixing ratio from partial pressure of water vapour and total pressure
-   * - :func:`~pyjams.eair2rhair`
+   * - :func:`~pyjams.air_humidity.eair2rhair`
      - Relative humidity from partial pressure of water vapour and temperature
-   * - :func:`~pyjams.eair2shair`
+   * - :func:`~pyjams.air_humidity.eair2shair`
      - Specific humidity from partial pressure of water vapour and total pressure
-   * - :func:`~pyjams.eair2vpd`
+   * - :func:`~pyjams.air_humidity.eair2vpd`
      - Air vapour pressure deficit from partial pressure and temperature
    * - :func:`~pyjams.screening.ee`
      - Parameter screening using Morris' method of Elementary Effects,
@@ -164,7 +164,7 @@ Functions and modules (alphabetical)
      - Convert dates to French date format DD/MM/YYYY hh:mm:ss
    * - :func:`~pyjams.date2date.en2us`
      - Convert dates to American date format MM/DD/YYYY hh:mm:ss
-   * - :func:`~pyjams.esat`
+   * - :func:`~pyjams.air_humidity.esat`
      - Saturation vapour pressure over water and ice
    * - :func:`~pyjams.date2date.fr2date`
      - Convert French dates to standard date format DD.MM.YYYY hh:mm:ss
@@ -184,26 +184,26 @@ Functions and modules (alphabetical)
      - Special functions for testing optimisations, sensitivity analysis,
        several forms of the logistic function and its derivatives, and other
        functions to be used with :mod:`scipy.optimize`
-   * - :func:`~pyjams.gridcellarea`
+   * - :func:`~pyjams.gridcellarea.gridcellarea`
      - Area of grid cells on Earth
    * - :func:`~pyjams.ncinfo.infonetcdf`
      - Extract information from netCDF file, same as :func:`ncinfo`
    * - :func:`~pyjams.romanliterals.int2roman`
      - Integer to Roman numeral conversion
-   * - :func:`~pyjams.kernel_regression`
+   * - :func:`~pyjams.kernel_regression.kernel_regression`
      - Multi-dimensional non-parametric kernel regression
-   * - :func:`~pyjams.kernel_regression_h`
+   * - :func:`~pyjams.kernel_regression.kernel_regression_h`
      - Determination of bandwidth for kernel regression
-   * - :func:`~pyjams.mad`
+   * - :func:`~pyjams.mad.mad`
      - Median absolute deviation test
    * - :class:`~pyjams.mcplot.mcPlot`
      - Matthias Cuntz' standard plotting class
-   * - :func:`~pyjams.means`
+   * - :func:`~pyjams.means.means`
      - Calculate daily, monthly, yearly, etc. means of data
    * - :func:`~pyjams.morris_method.morris_sampling`
      - Sampling of optimised trajectories for Morris measures / Elementary
        Effects
-   * - :func:`~pyjams.mrair2eair`
+   * - :func:`~pyjams.air_humidity.mrair2eair`
      - Partial pressure of water vapour from mixing ratio and total pressure
    * - :func:`~pyjams.ncinfo.ncinfo`
      - Extract information from netCDF file
@@ -216,30 +216,30 @@ Functions and modules (alphabetical)
      - Return datetime objects given numeric time values
    * - :func:`~pyjams.pack.pack`
      - Pack array with mask like Fortran intrinsic pack
-   * - :func:`~pyjams.position`
+   * - :func:`~pyjams.position.position`
      - Position arrays of subplots to be used with add_axes
    * - :func:`~pyjams.ncread.readnetcdf`
      - Read variables from netCDF file, same as `ncread`
-   * - :func:`~pyjams.rhair2eair`
+   * - :func:`~pyjams.air_humidity.rhair2eair`
      - Partial pressure of water vapour from relative humidity and temperature
-   * - :func:`~pyjams.rhair2vpd`
+   * - :func:`~pyjams.air_humidity.rhair2vpd`
      - Air vapour pressure deficit from relative humidity and temperature
    * - :func:`~pyjams.romanliterals.roman2int`
      - Roman numeral to integer conversion
    * - :func:`~pyjams.sce.sce`
      - Shuffled-Complex-Evolution algorithm for function min(max)imisation
    * - :func:`~pyjams.screening.screening`
      - Parameter screening using Morris' method of Elementary Effects
-   * - :func:`~pyjams.shair2eair`
+   * - :func:`~pyjams.air_humidity.shair2eair`
      - Partial pressure of water vapour from specific humidity and total pressure
    * - :func:`~pyjams.text2plot.signature2plot`
      - Write a copyright notice on a plot
    * - :func:`~pyjams.fsread.sread`
      - Read strings from a file into 2D string array
-   * - :func:`~pyjams.str2tex`
+   * - :func:`~pyjams.str2tex.str2tex`
      - Convert strings to LaTeX strings in math environment used by matplotlib's
        usetex
-   * - :func:`~pyjams.tee`
+   * - :func:`~pyjams.tee.tee`
      - Prints arguments on screen and in file, like Unix/Linux tee utility
    * - :func:`~pyjams.text2plot.text2plot`
      - Write text on a plot
@@ -255,9 +255,9 @@ Functions and modules (alphabetical)
      - Convert dates to English date format YYYY-MM-DD hh:mm:ss
    * - :func:`~pyjams.date2date.us2fr`
      - Convert dates to French date format DD/MM/YYYY hh:mm:ss
-   * - :func:`~pyjams.vpd2eair`
+   * - :func:`~pyjams.air_humidity.vpd2eair`
      - Partial pressure of water vapour from air vapour pressure deficit and temperature
-   * - :func:`~pyjams.vpd2rhair`
+   * - :func:`~pyjams.air_humidity.vpd2rhair`
      - Relative humidity from air vapour pressure deficit and temperature
    * - :func:`~pyjams.fsread.xlsread`
      - Read numbers and strings from Excel file into 2D float and string arrays,
@@ -289,7 +289,7 @@ Functions and modules per category
        * - :func:`~pyjams.argsort.argsort`
          - Wrapper for numpy.argsort, numpy.ma.argsort, and sorted for
            Python iterables
-       * - :func:`~pyjams.closest`
+       * - :func:`~pyjams.closest.closest`
          - Index in array which entry is closest to a given number
        * - :func:`~pyjams.pack.pack`
          - Pack array with mask like Fortran intrinsic pack
@@ -321,13 +321,13 @@ Functions and modules per category
 
        * - Function/module
          - Short description
-       * - :func:`~pyjams.kernel_regression`
+       * - :func:`~pyjams.kernel_regression.kernel_regression`
          - Multi-dimensional non-parametric kernel regression
-       * - :func:`~pyjams.kernel_regression_h`
+       * - :func:`~pyjams.kernel_regression.kernel_regression_h`
          - Determination of bandwidth for kernel regression
-       * - :func:`~pyjams.mad`
+       * - :func:`~pyjams.mad.mad`
          - Median absolute deviation test
-       * - :func:`~pyjams.means`
+       * - :func:`~pyjams.means.means`
          - Calculate daily, monthly, yearly, etc. means of data
 
 .. _Date and Time:
@@ -387,7 +387,7 @@ Functions and modules per category
 
        * - Function/module
          - Short description
-       * - :func:`~pyjams.gridcellarea`
+       * - :func:`~pyjams.gridcellarea.gridcellarea`
          - Area of grid cells on Earth
 
 .. _Isotopes:
@@ -399,9 +399,9 @@ Functions and modules per category
 
        * - Function/module
          - Short description
-       * - :func:`~pyjams.alpha_equ_h2o`
+       * - :func:`~pyjams.alpha_equ_h2o.alpha_equ_h2o`
          - Equilibrium fractionation between liquid water and vapour
-       * - :func:`~pyjams.alpha_kin_h2o`
+       * - :func:`~pyjams.alpha_kin_h2o.alpha_kin_h2o`
          - Kinetic fractionation of molecular diffusion of water vapour
 
 .. _Math:
@@ -444,27 +444,27 @@ Functions and modules per category
 
        * - Function/module
          - Short description
-       * - :func:`~pyjams.eair2mrair`
+       * - :func:`~pyjams.air_humidity.eair2mrair`
          - Mixing ratio from partial pressure of water vapour and total pressure
-       * - :func:`~pyjams.eair2rhair`
+       * - :func:`~pyjams.air_humidity.eair2rhair`
          - Relative humidity from partial pressure of water vapour and temperature
-       * - :func:`~pyjams.eair2shair`
+       * - :func:`~pyjams.air_humidity.eair2shair`
          - Specific humidity from partial pressure of water vapour and total pressure
-       * - :func:`~pyjams.eair2vpd`
+       * - :func:`~pyjams.air_humidity.eair2vpd`
          - Air vapour pressure deficit from partial pressure and temperature
-       * - :func:`~pyjams.esat`
+       * - :func:`~pyjams.air_humidity.esat`
          - Saturation vapour pressure over water and ice
-       * - :func:`~pyjams.mrair2eair`
+       * - :func:`~pyjams.air_humidity.mrair2eair`
          - Partial pressure of water vapour from mixing ratio and total pressure
-       * - :func:`~pyjams.rhair2eair`
+       * - :func:`~pyjams.air_humidity.rhair2eair`
          - Partial pressure of water vapour from relative humidity and temperature
-       * - :func:`~pyjams.rhair2vpd`
+       * - :func:`~pyjams.air_humidity.rhair2vpd`
          - Air vapour pressure deficit from relative humidity and temperature
-       * - :func:`~pyjams.shair2eair`
+       * - :func:`~pyjams.air_humidity.shair2eair`
          - Partial pressure of water vapour from specific humidity and total pressure
-       * - :func:`~pyjams.vpd2eair`
+       * - :func:`~pyjams.air_humidity.vpd2eair`
          - Partial pressure of water vapour from air vapour pressure deficit and temperature
-       * - :func:`~pyjams.vpd2rhair`
+       * - :func:`~pyjams.air_humidity.vpd2rhair`
          - Relative humidity from air vapour pressure deficit and temperature
 
 .. _Miscellaneous:
@@ -491,7 +491,7 @@ Functions and modules per category
          - Integer to Roman numeral conversion
        * - :func:`~pyjams.romanliterals.roman2int`
          - Roman numeral to integer conversion
-       * - :func:`~pyjams.tee`
+       * - :func:`~pyjams.tee.tee`
          - Prints arguments on screen and in file, like Unix/Linux tee utility
 
 .. _Plotting:
@@ -509,15 +509,15 @@ Functions and modules per category
          - Collection of color palettes and continuous color maps
        * - :func:`~pyjams.romanliterals.int2roman`
          - Integer to Roman numeral conversion
-       * - :class:`~pyjams.mcPlot`
+       * - :class:`~pyjams.mcplot.mcPlot`
          - Matthias Cuntz' standard plotting class
-       * - :func:`~pyjams.position`
+       * - :func:`~pyjams.position.position`
          - Position arrays of subplots to be used with add_axes
        * - :func:`~pyjams.romanliterals.roman2int`
          - Roman numeral to integer conversion
        * - :func:`~pyjams.text2plot.signature2plot`
          - Write a copyright notice on a plot
-       * - :func:`~pyjams.str2tex`
+       * - :func:`~pyjams.str2tex.str2tex`
          - Convert strings to LaTeX strings in math environment used by
            matplotlib's usetex
        * - :func:`~pyjams.text2plot.text2plot`

diff --git a/docs/html/_sources/isotopes.rst.txt → docs/html/_sources/isotopes.rst b/docs/html/_sources/isotopes.rst.txt → docs/html/_sources/isotopes.rst
diff --git a/docs/html/_sources/jams.rst.txt → docs/html/_sources/jams.rst b/docs/html/_sources/jams.rst.txt → docs/html/_sources/jams.rst
diff --git a/docs/html/_sources/kernel_regression.rst.txt → docs/html/_sources/kernel_regression.rst b/docs/html/_sources/kernel_regression.rst.txt → docs/html/_sources/kernel_regression.rst
diff --git a/docs/html/_sources/mad.rst.txt → docs/html/_sources/mad.rst b/docs/html/_sources/mad.rst.txt → docs/html/_sources/mad.rst
diff --git a/docs/html/_sources/math.rst.txt → docs/html/_sources/math.rst b/docs/html/_sources/math.rst.txt → docs/html/_sources/math.rst
diff --git a/docs/html/_sources/mcplot.rst.txt → docs/html/_sources/mcplot.rst b/docs/html/_sources/mcplot.rst.txt → docs/html/_sources/mcplot.rst
diff --git a/docs/html/_sources/means.rst.txt → docs/html/_sources/means.rst b/docs/html/_sources/means.rst.txt → docs/html/_sources/means.rst
diff --git a/docs/html/_sources/meteorology.rst.txt → docs/html/_sources/meteorology.rst b/docs/html/_sources/meteorology.rst.txt → docs/html/_sources/meteorology.rst
diff --git a/docs/html/_sources/miscellaneous.rst.txt → docs/html/_sources/miscellaneous.rst b/docs/html/_sources/miscellaneous.rst.txt → docs/html/_sources/miscellaneous.rst
diff --git a/docs/html/_sources/morris_method.rst.txt → docs/html/_sources/morris_method.rst b/docs/html/_sources/morris_method.rst.txt → docs/html/_sources/morris_method.rst
diff --git a/docs/html/_sources/ncinfo.rst.txt → docs/html/_sources/ncinfo.rst b/docs/html/_sources/ncinfo.rst.txt → docs/html/_sources/ncinfo.rst
diff --git a/docs/html/_sources/ncio.netcdfio.rst.txt → docs/html/_sources/ncio.netcdfio.rst b/docs/html/_sources/ncio.netcdfio.rst.txt → docs/html/_sources/ncio.netcdfio.rst
diff --git a/docs/html/_sources/ncio.rst.txt → docs/html/_sources/ncio.rst b/docs/html/_sources/ncio.rst.txt → docs/html/_sources/ncio.rst
diff --git a/docs/html/_sources/ncread.rst.txt → docs/html/_sources/ncread.rst b/docs/html/_sources/ncread.rst.txt → docs/html/_sources/ncread.rst
diff --git a/docs/html/_sources/npyio.rst.txt → docs/html/_sources/npyio.rst b/docs/html/_sources/npyio.rst.txt → docs/html/_sources/npyio.rst
diff --git a/docs/html/_sources/pack.rst.txt → docs/html/_sources/pack.rst b/docs/html/_sources/pack.rst.txt → docs/html/_sources/pack.rst
diff --git a/docs/html/_sources/plotting.rst.txt → docs/html/_sources/plotting.rst b/docs/html/_sources/plotting.rst.txt → docs/html/_sources/plotting.rst
diff --git a/docs/html/_sources/position.rst.txt → docs/html/_sources/position.rst b/docs/html/_sources/position.rst.txt → docs/html/_sources/position.rst
diff --git a/docs/html/_sources/romanliterals.rst.txt → docs/html/_sources/romanliterals.rst b/docs/html/_sources/romanliterals.rst.txt → docs/html/_sources/romanliterals.rst
diff --git a/docs/html/_sources/sce.rst.txt → docs/html/_sources/sce.rst b/docs/html/_sources/sce.rst.txt → docs/html/_sources/sce.rst
diff --git a/docs/html/_sources/screening.rst.txt → docs/html/_sources/screening.rst b/docs/html/_sources/screening.rst.txt → docs/html/_sources/screening.rst
diff --git a/docs/html/_sources/special_files.rst.txt → docs/html/_sources/special_files.rst b/docs/html/_sources/special_files.rst.txt → docs/html/_sources/special_files.rst
diff --git a/docs/html/_sources/str2tex.rst.txt → docs/html/_sources/str2tex.rst b/docs/html/_sources/str2tex.rst.txt → docs/html/_sources/str2tex.rst
diff --git a/docs/html/_sources/tee.rst.txt → docs/html/_sources/tee.rst b/docs/html/_sources/tee.rst.txt → docs/html/_sources/tee.rst
diff --git a/docs/html/_sources/text2plot.rst.txt → docs/html/_sources/text2plot.rst b/docs/html/_sources/text2plot.rst.txt → docs/html/_sources/text2plot.rst