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Update ensembl/ensembl.cfg to add the following variables:
REFERENCE_FILE=ensembl-reference.csv ALIGN_INDEX_TOOLS="bwa bowtie2 kallisto hisat2" ALIGN_TOOLS_BASE=/opt/software/external INDEX_SCRIPT_BASE=/home/bioadmin/pipeline-prep/tools
The text was updated successfully, but these errors were encountered:
LucyHut
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Update ensembl/ensembl.cfg to add the following variables:
Pipeline dataset pre-indexing setting
REFERENCE_FILE=ensembl-reference.csv
ALIGN_INDEX_TOOLS="bwa bowtie2 kallisto hisat2"
ALIGN_TOOLS_BASE=/opt/software/external
INDEX_SCRIPT_BASE=/home/bioadmin/pipeline-prep/tools
The text was updated successfully, but these errors were encountered: