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Refactoring this package #34
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Done:
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To Do
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I think I know what you mean, but just to be sure, can you define for me your use of the term "refactoring" |
Code Refactoring: The process of cleaning the code without changing its functionality See :https://refactoring.guru/refactoring |
For each package - get rid of code redundancies by refactoring the following:
Notes: We have the following types of packages --
The package has no git repos - version check using release notes -
The package has a git repos but the git repos does not tag new releases - version check using release notes -
The package has a git repos with release tags and the install is done from git export version tarball - then run the install commands.
The package has a git repos with release tags - But package version downloaded from site
Boost (install from source running a set of commands)
Fastx_toolkit (install from source running a set of commands)
Eigen (install done from binaries/libraries)
Cufflinks ( install done from binaries)
Fastqc ( install done from binaries)
Kallisto ( install done from binaries)
Picard ( install done from binaries)
Salmon ( install done from binaries)
Stringtie ( install done from binaries)
Tophat ( install done from binaries)
Trimgalore ( install done from binaries)
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