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Scripts from Wu M-Y, Mead ME, Lee M-K, Ostrem Loss EM, Kim S-C, Rokas A, Yu J-H. 2018. Systematic dissection of the evolutionarily conserved WetA developmental regulator across a genus of filamentous fungi. mBio 9:e01130-18. https://doi.org/10.1128/mBio.01130-18.

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meadm/WetA_Aflav_Anidu_Afumi

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Afumigatus wetA RNAseq data

Afumigatus wetA RNAseq data

 
 

Analyzing "species-specific" genes

Analyzing "species-specific" genes

 
 

Analyzing Second Set of ChIP-seq data

Analyzing Second Set of ChIP-seq data

 
 

Calling Orthologs between flavus fumigatus and nidulans using OrthoMCL

Calling Orthologs between flavus fumigatus and nidulans using OrthoMCL

 
 

Combining and analyzing peaks from both Anidu ChIP experiments

Combining and analyzing peaks from both Anidu ChIP experiments

 
 

Comparing GO data from wetA flavus nidulans and fumigatus

Comparing GO data from wetA flavus nidulans and fumigatus

 
 

Comparing GO lists_Previously published Aflav data

Comparing GO lists_Previously published Aflav data

 
 

Finding and analyzing occurrences of the combined motif

Finding and analyzing occurrences of the combined motif

 
 

GEO submission for comparative wetA paper

GEO submission for comparative wetA paper

 
 

Look for occurrences of the WRE in orthologs

Look for occurrences of the WRE in orthologs

 
 

Make Circos Plot with 1-1-1 and published Aflav expression data

Make Circos Plot with 1-1-1 and published Aflav expression data

 
 

Making N-N-N Circos Plot

Making N-N-N Circos Plot

 
 

LICENSE

LICENSE

 
 

README.md

README.md

 
 

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WetA_Aflav_Anidu_Afumi

Scripts from Wu M-Y, Mead ME, Lee M-K, Ostrem Loss EM, Kim S-C, Rokas A, Yu J-H. 2018. Systematic dissection of the evolutionarily conserved WetA developmental regulator across a genus of filamentous fungi. mBio 9:e01130-18. https://doi.org/10.1128/mBio.01130-18.

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Scripts from Wu M-Y, Mead ME, Lee M-K, Ostrem Loss EM, Kim S-C, Rokas A, Yu J-H. 2018. Systematic dissection of the evolutionarily conserved WetA developmental regulator across a genus of filamentous fungi. mBio 9:e01130-18. https://doi.org/10.1128/mBio.01130-18.

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