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README.md
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README.md

MED2RDF

The med2rdf project develops converters and provides RDF data of biomedical databases.

Project resources

Biomedical databases

Currently we are working on the following databases:

  • dbSNP
  • dbVar
  • dbNSFP
  • ExAC
  • gnomAD
  • ClinVar
  • DGIdb
  • COSMIC
  • CIViC
  • HiNT
  • INstruct
  • HGNC

etc.

RDF data models

  • Ontologies for above biomedical databases
    • Ontology commonly used among databases
    • Ontology specific to each database
  • Human chromosome ontology
  • Standardization of variation representation
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