index.html network exprot

[huizhen2014]

Thanks for your software, it very useful.
Can your give me some suggestion about how to export the the network picture after opening the index.html file ? I only found the FAM_xxxx tree picture could be export with SVG format. And, If I try to use the cytoscape to display the network, I felt it is hard to make a good picture as exhibited in the index.html web page. Or, could you give some suggestion about the network style and colour parameters used in the index.html file ? Then, I could use the similar parameter setting when I use the cytoscape to show the network.

Thanks

[adraismawur]

Hello!

Unfortunately we do not (yet) have a means to export the network as shown in the index.html as an image.

The graph layout is generated using a force-directed layout. The parameters in use are:

spring length: 100
spring coefficient 0.0005
drag coefficient 0.1
gravity: -1

The nodes in the network are colored according to the family that is assigned by BiG-SCAPE. These families can be found in [output folder]/network_files/[label]/[class]/mix_clustering_[cutoff].tsv

[huizhen2014]

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________________________________ From: Arjan Draisma (wur) ***@***.***> Sent: Monday, January 8, 2024 4:45:05 PM To: medema-group/BiG-SCAPE ***@***.***> Cc: HUI Zhen ***@***.***>; Author ***@***.***> Subject: Re: [medema-group/BiG-SCAPE] index.html network exprot (Issue #112) Hello! Unfortunately we do not (yet) have a means to export the network as shown in the index.html as an image. The graph layout is generated using a force-directed layout. The parameters in use are: spring length: 100 spring coefficient 0.0005 drag coefficient 0.1 gravity: -1 The nodes in the network are colored according to the family that is assigned by BiG-SCAPE. These families can be found in [output folder]/network_files/[label]/[class]/mix_clustering_[cutoff].tsv — Reply to this email directly, view it on GitHub<#112 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AF2K5CRVDGLKJLO2MJPWOLLYNOWZDAVCNFSM6AAAAABBE6MYSGVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTQOBQGU4DCNRSGA>. You are receiving this because you authored the thread.Message ID: ***@***.***>