Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Qualify columns with table name in generated SQL #4487

Merged
merged 2 commits into from
May 1, 2024
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
15 changes: 15 additions & 0 deletions packages/server/src/fhir/search.test.ts
Original file line number Diff line number Diff line change
Expand Up @@ -3025,6 +3025,21 @@ describe('FHIR Search', () => {
expect(result.entry?.length).toBe(1);
}));

test('Ambiguous search columns', () =>
withTestContext(async () => {
const result = await repo.search({
resourceType: 'ProjectMembership',
filters: [
{
code: 'user:User.email',
operator: Operator.EQUALS,
value: randomUUID() + '@example.com',
},
],
});
expect(result.entry?.length).toBe(0);
}));

test('Patient by name with stop word', () =>
withTestContext(async () => {
const seed = randomUUID();
Expand Down
57 changes: 38 additions & 19 deletions packages/server/src/fhir/search.ts
Original file line number Diff line number Diff line change
Expand Up @@ -627,21 +627,27 @@ function buildNormalSearchFilterExpression(
): Expression {
const details = getSearchParameterDetails(resourceType, param);
if (filter.operator === Operator.MISSING) {
return new Condition(details.columnName, filter.value === 'true' ? '=' : '!=', null);
return new Condition(new Column(table, details.columnName), filter.value === 'true' ? '=' : '!=', null);
} else if (param.type === 'string') {
return buildStringSearchFilter(details, filter.operator, filter.value.split(','));
return buildStringSearchFilter(table, details, filter.operator, filter.value.split(','));
} else if (param.type === 'token' || param.type === 'uri') {
return buildTokenSearchFilter(table, details, filter.operator, filter.value.split(','));
} else if (param.type === 'reference') {
return buildReferenceSearchFilter(details, filter.value.split(','));
return buildReferenceSearchFilter(table, details, filter.value.split(','));
} else if (param.type === 'date') {
return buildDateSearchFilter(table, details, filter);
} else if (param.type === 'quantity') {
return new Condition(details.columnName, fhirOperatorToSqlOperator(filter.operator), filter.value);
return new Condition(
new Column(table, details.columnName),
fhirOperatorToSqlOperator(filter.operator),
filter.value
);
} else {
const values = filter.value
.split(',')
.map((v) => new Condition(details.columnName, fhirOperatorToSqlOperator(filter.operator), v));
.map(
(v) => new Condition(new Column(undefined, details.columnName), fhirOperatorToSqlOperator(filter.operator), v)
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

undefined?

);
const expr = new Disjunction(values);
return details.array ? new ArraySubquery(new Column(undefined, details.columnName), expr) : expr;
}
Expand Down Expand Up @@ -733,27 +739,38 @@ function buildFilterParameterComparison(

/**
* Adds a string search filter as "WHERE" clause to the query builder.
* @param table - The table in which to search.
* @param details - The search parameter details.
* @param operator - The search operator.
* @param values - The string values to search against.
* @returns The select query condition.
*/
function buildStringSearchFilter(details: SearchParameterDetails, operator: Operator, values: string[]): Expression {
function buildStringSearchFilter(
table: string,
details: SearchParameterDetails,
operator: Operator,
values: string[]
): Expression {
const column = new Column(details.array ? undefined : table, details.columnName);
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

undefined? Curious about why that was necessary.

Copy link
Member Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

This is basically a workaround carried forward from the existing implementation, which requires it to deal with the ArraySubquery where the inner subquery needs to refer to the unqualified column name (aliased from unnest())


const expression = buildStringFilterExpression(column, operator, values);
if (details.array) {
return new ArraySubquery(new Column(table, details.columnName), expression);
}
return expression;
}

function buildStringFilterExpression(column: Column, operator: Operator, values: string[]): Expression {
const conditions = values.map((v) => {
if (operator === Operator.EXACT) {
return new Condition(details.columnName, '=', v);
return new Condition(column, '=', v);
} else if (operator === Operator.CONTAINS) {
return new Condition(details.columnName, 'LIKE', `%${v}%`);
return new Condition(column, 'LIKE', `%${v}%`);
} else {
return new Condition(details.columnName, 'LIKE', `${v}%`);
return new Condition(column, 'LIKE', `${v}%`);
}
});

const expression = new Disjunction(conditions);
if (details.array) {
return new ArraySubquery(new Column(undefined, details.columnName), expression);
}
return expression;
return new Disjunction(conditions);
}

/**
Expand Down Expand Up @@ -812,20 +829,22 @@ function buildTokenSearchFilter(

/**
* Adds a reference search filter as "WHERE" clause to the query builder.
* @param table - The table in which to search.
* @param details - The search parameter details.
* @param values - The string values to search against.
* @returns The select query condition.
*/
function buildReferenceSearchFilter(details: SearchParameterDetails, values: string[]): Expression {
function buildReferenceSearchFilter(table: string, details: SearchParameterDetails, values: string[]): Expression {
const column = new Column(table, details.columnName);
values = values.map((v) =>
!v.includes('/') && (details.columnName === 'subject' || details.columnName === 'patient') ? `Patient/${v}` : v
);
if (details.array) {
return new Condition(details.columnName, 'ARRAY_CONTAINS', values, 'TEXT[]');
return new Condition(column, 'ARRAY_CONTAINS', values, 'TEXT[]');
} else if (values.length === 1) {
return new Condition(details.columnName, '=', values[0]);
return new Condition(column, '=', values[0]);
}
return new Condition(details.columnName, 'IN', values);
return new Condition(column, 'IN', values);
}

/**
Expand Down
Loading