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Can't open /miniconda3/622b4111/lib/R/etc/ldpaths #1

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valscherz opened this issue Dec 6, 2018 · 3 comments
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Can't open /miniconda3/622b4111/lib/R/etc/ldpaths #1

valscherz opened this issue Dec 6, 2018 · 3 comments
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valscherz commented Dec 6, 2018 •
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The following error sometimes occurs near the end of the pipeline, when running the visualizations scripts. A rerun of the same snakemake command usually solves it.

Activating conda environment: /home/pipeline_user/miniconda3/622b4111
/home/pipeline_user/miniconda3/622b4111/lib/R/bin/R: 238: .: Can't open /home/pipeline_user/miniconda3/622b4111/lib/R/etc/ldpaths
@valscherz valscherz added the bug Something isn't working label Dec 6, 2018
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valscherz commented Dec 19, 2018 •
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A rerun of the same snakemake command usually solves it.

And if not, rm of the conda environment and rerun,

@valscherz valscherz reopened this Dec 19, 2018
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It is actually a conda problem. Hopefully will be solved
conda-forge/r-base-feedstock#67 (comment)

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Solved by conda-forge/r-base-feedstock#84 (comment)

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