adapt memory fro eggNOg if virtual meory is used. don't hard code. #351

metagenome-atlas · Jan 8, 2021 · bb0d85b · bb0d85b
1 parent 4c29b37
commit bb0d85b
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/atlas/rules/genecatalog.snakefile b/atlas/rules/genecatalog.snakefile
@@ -465,7 +465,7 @@ rule eggNOG_annotation:
     threads:
         config.get("threads", 1)
     resources:
-        mem=20
+        mem=  2*config["simplejob_mem"] + (37 if config['eggNOG_use_virtual_disk'] else 0)
     shadow:
         "minimal"
     conda: