DRAM functional annotation

[SilasK]

Integrating https://github.com/shafferm/DRAM into atlas.

DRAM does a lot of cool things but not everything I would like.

Downloading a lot of DBs and do the annotation.
KOfam, CAZy are the most interesting, I think.

It creates a summary of some modules but not all that are in Kegg.
It contains the information of KO to Kegg module mapping but I don't know how ambiguous mapping are handled.

[SilasK]

• genome_folder checkpoint function. from 06fb3d8

[JoseLopezArcondo]

Dear Silas,

I would like to include motility as a "module", is there a way to include this, maybe from your jupyter notebook?

Best