atlas_analyze

Scripts to get the most of the output of metagenome-atlas

Here are some scripts to analyze the output of metagenome-atlas >= v2.3

Get started

To get started download this repo.

git clone https://github.com/metagenome-atlas/atlas_analyze.git
cd atlas_analyze

Run simple ./setup.sh

Then activate the environment:

conda activate analyze


analyze.py path/to/atlas_workingdir

For an example see this notebook

Name		Name	Last commit message	Last commit date
Latest commit History 19 Commits
data		data
scripts		scripts
.gitignore		.gitignore
README.md		README.md
Snakefile		Snakefile
analyze.py		analyze.py
condaenv.yml		condaenv.yml
setup.sh		setup.sh