Update logging

metagentools · Aug 12, 2020 · df30a2c · df30a2c
1 parent 53b74f4
commit df30a2c
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Showing 6 changed files with 11 additions and 5 deletions.
diff --git a/graphbin_utils/graphbin_Canu.py b/graphbin_utils/graphbin_Canu.py
@@ -44,6 +44,7 @@ def run(args):
     formatter = logging.Formatter('%(asctime)s - %(levelname)s - %(message)s')
     consoleHeader = logging.StreamHandler()
     consoleHeader.setFormatter(formatter)
+    consoleHeader.setLevel(logging.INFO)
     logger.addHandler(consoleHeader)
 
     start_time = time.time()
@@ -62,7 +63,7 @@ def run(args):
     #---------------------------------------------------
 
     fileHandler = logging.FileHandler(output_path+"/"+prefix+"graphbin.log")
-    fileHandler.setLevel(logging.INFO)
+    fileHandler.setLevel(logging.DEBUG)
     fileHandler.setFormatter(formatter)
     logger.addHandler(fileHandler)
 

diff --git a/graphbin_utils/graphbin_Flye.py b/graphbin_utils/graphbin_Flye.py
@@ -44,6 +44,7 @@ def run(args):
     formatter = logging.Formatter('%(asctime)s - %(levelname)s - %(message)s')
     consoleHeader = logging.StreamHandler()
     consoleHeader.setFormatter(formatter)
+    consoleHeader.setLevel(logging.INFO)
     logger.addHandler(consoleHeader)
 
     start_time = time.time()
@@ -61,7 +62,7 @@ def run(args):
     #---------------------------------------------------
 
     fileHandler = logging.FileHandler(output_path+"/"+prefix+"graphbin.log")
-    fileHandler.setLevel(logging.INFO)
+    fileHandler.setLevel(logging.DEBUG)
     fileHandler.setFormatter(formatter)
     logger.addHandler(fileHandler)
 

diff --git a/graphbin_utils/graphbin_MEGAHIT.py b/graphbin_utils/graphbin_MEGAHIT.py
@@ -45,6 +45,7 @@ def run(args):
     formatter = logging.Formatter('%(asctime)s - %(levelname)s - %(message)s')
     consoleHeader = logging.StreamHandler()
     consoleHeader.setFormatter(formatter)
+    consoleHeader.setLevel(logging.INFO)
     logger.addHandler(consoleHeader)
 
     start_time = time.time()
@@ -63,7 +64,7 @@ def run(args):
     #---------------------------------------------------
 
     fileHandler = logging.FileHandler(output_path+"/"+prefix+"graphbin.log")
-    fileHandler.setLevel(logging.INFO)
+    fileHandler.setLevel(logging.DEBUG)
     fileHandler.setFormatter(formatter)
     logger.addHandler(fileHandler)
 

diff --git a/graphbin_utils/graphbin_Miniasm.py b/graphbin_utils/graphbin_Miniasm.py
@@ -45,6 +45,7 @@ def run(args):
     formatter = logging.Formatter('%(asctime)s - %(levelname)s - %(message)s')
     consoleHeader = logging.StreamHandler()
     consoleHeader.setFormatter(formatter)
+    consoleHeader.setLevel(logging.DEBUG)
     logger.addHandler(consoleHeader)
 
     start_time = time.time()

diff --git a/graphbin_utils/graphbin_SGA.py b/graphbin_utils/graphbin_SGA.py
@@ -45,6 +45,7 @@ def run(args):
     formatter = logging.Formatter('%(asctime)s - %(levelname)s - %(message)s')
     consoleHeader = logging.StreamHandler()
     consoleHeader.setFormatter(formatter)
+    consoleHeader.setLevel(logging.INFO)
     logger.addHandler(consoleHeader)
 
     start_time = time.time()
@@ -60,7 +61,7 @@ def run(args):
     #---------------------------------------------------
 
     fileHandler = logging.FileHandler(output_path+"/"+prefix+"graphbin.log")
-    fileHandler.setLevel(logging.INFO)
+    fileHandler.setLevel(logging.DEBUG)
     fileHandler.setFormatter(formatter)
     logger.addHandler(fileHandler)
 

diff --git a/graphbin_utils/graphbin_SPAdes.py b/graphbin_utils/graphbin_SPAdes.py
@@ -46,6 +46,7 @@ def run(args):
     formatter = logging.Formatter('%(asctime)s - %(levelname)s - %(message)s')
     consoleHeader = logging.StreamHandler()
     consoleHeader.setFormatter(formatter)
+    consoleHeader.setLevel(logging.INFO)
     logger.addHandler(consoleHeader)
 
     start_time = time.time()
@@ -62,7 +63,7 @@ def run(args):
     #---------------------------------------------------
 
     fileHandler = logging.FileHandler(output_path+"/"+prefix+"graphbin.log")
-    fileHandler.setLevel(logging.INFO)
+    fileHandler.setLevel(logging.DEBUG)
     fileHandler.setFormatter(formatter)
     logger.addHandler(fileHandler)