lute param class, method, and generic definitions for the MuSiC deconvolution algorithm. See ?musicParam-class for more information.
Install this package from GitHub using:
devtools::install_github("metamaden/musicParam")
This param class requires the MuSiC software to run (available from GitHub at xuranw/MuSiC).
A YML file has been included to set up a conda environment to run the main dependencies ./inst/yml/music-version.yml.
Wang, Xuran and Jiaxin Fan. MuSiC: Multi-subject single cell deconvolution. (2022) GitHub, R package version 1.0.0. URL: https://github.com/xuranw/MuSiC.
Wang, X., Park, J., Susztak, K. et al. Bulk tissue cell type deconvolution with multi-subject single-cell expression reference. Nat Commun 10, 380 (2019). https://doi.org/10.1038/s41467-018-08023-x