bbr.bayes is an extension to the bbr package for traceable and reproducible Bayesian modeling. Currently, bbr.bayes supports Stan models (powered by cmdstanr). Upcoming releases will extend Stan support and add support for NONMEM Bayes models.
This repository contains examples of the various tasks associated with using bbr.bayes to fit models in Stan. It is expected that these
will evolve with time.
- Model estimation data set
- location :
data/derived/exdata3.csv - data specification file :
data/derived/exdata3.yml - exploratory data analysis :
script/info-data.Rmd
- location :
- Initial model creation and submission:
script/initial-model-submission.Rmd - Example model diagnostics:
script/initial-model-diagnostics.Rmd - Iterative model development:
script/revised-models.Rmd - Standalone generated quantities:
script/generated-quantities.Rmd - Summarizing and comparing models:
script/modeling-summary.Rmd
- Helper functions for model management:
script/functions-model.R
- metworx-22.09.1
- 4.1.3
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