MeRGE demonstration for IU CTSI workshop in Indianapolis, IN, Feb 2023.
This workshop focused on the packages that are showcased in the MeRGE Expo 1 website and the code in this repo is a simplified version of code maintained in the MeRGE Expo 1 GitHub Repo.
/model = the NONMEM-formatted model files (.ctl)
/script = the scripts that were demonstrated during the workshop
/data = a simulated data file to use as example "observed" data
/presentation = a pdf file with the hands-on slides for the workshop
Packages have been specified in the renv.lock file and should be accessible by first running in your RStudio Console window:
install.packages("renv")
library(renv)
renv::restore()
Users should respond "Yes" when asked to activate the project after calling renv::restore(). The packages will then begin installing. (This may take awhile.)
For further information on using renv, please see: https://rstudio.github.io/renv/articles/renv.html#reproducibility
This repository also includes a pkgr.yml file with all relevant packages. If you have pkgr installed, you can follow the steps below to install your packages. This will go faster than the renv::restore() method, because pkgr uses multi-threading and caching. (If you are on Metworx, you will have pkgr installed.)
In your R console
install.packages("renv")
renv::init(bare = TRUE)
In your terminal
# cd to this repo directory
pkgr install
Once pkgr finishes installing, restart your R session.