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Update sphinx/intro.rst
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mdavy86 committed Nov 7, 2012
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Expand Up @@ -29,8 +29,7 @@ The best way to understand how Moa can help you to achieve this is by an example
( copy or link some protein sequences into 00.proteins )
$ mkdir 10.blast
$ cd 10.blast
$ mkdir 10.blast && cd 10.blast

An important feature of Moa is that each separate analysis step is contained within a separate directory. Two Moa jobs never share a directory. This forces a Moa user to break a workflow down to atomic parts, which is typically beneficial to the organization and coherence of a workflow. The order of steps is easily ordered by prefixing directory names with a number. Note that these prefixes are not enforced by Moa; any alphabetical organization would work as well. Once a directory is created, a Moa job can be created::

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