Merge pgenome:~/project/moa11 into moa.0.11

template2/simple.moa

@@ -17,7 +17,7 @@ parameter_category_order:
 parameters:
   process:
     category: ''
-    default: true
+    default: 'echo "Need to specify a process"'
     help: The command to execute
     optional: false
     type: string

template2/sync.moa

@@ -11,8 +11,9 @@ modification_date: Thu, 30 Jun 2011 21:25:53
 name: sync
 parameters:
   source:
-    help: The directory to keep in sync with
-    optional: false
+    help: The directory to keep in sync with. If not specified, this
+      template just keeps local directory synced
+    optional: true
     type: string
   ignore:
     help: ignore these names (space separated list)

template2/sync.run.py

@@ -19,13 +19,15 @@ def errex(message):
 if ignore:
     print "ignoring", ignore
 
-if not source:
-    errex("source directory is not defined")
-
-if not os.path.isdir(source):
-    errex("Source is not a directory")
-
-print "Source directory: %s" % source
+if source:
+    print "source directory is not defined"
+    SOURCE=False
+elif os.path.isdir(source):
+    SOURCE=True
+    print "Source directory: %s" % source
+else:
+    SOURCE=False
+    print "No source - just syncing"
 
 lastAccessTime = 0
 lastAccessDir = None
@@ -79,15 +81,21 @@ def errex(message):
     sys.exit(-1)
 
 
-print "start parsing the source directory"
+    
 originalConf = os.path.join(original, '.moa', 'config')
 
-sourcelist = [x for x in os.listdir(source) if os.path.isdir(x)]
-if os.path.exists('_ref'):
-    sourcelist.append('_ref')
+if SOURCE:
+    print "start parsing the source directory"
+    sourcelist = [x for x in os.listdir(source) if os.path.isdir(x)]
+    if os.path.exists('_ref'):
+        sourcelist.append('_ref')
+
+    #make sure we're not copying the file to itself
+    sourcelist.remove(original)
 
-#make sure we're not copying the file to itself
-sourcelist.remove(original)
+else:
+    #no sourcelist - just get a list of local directories
+    sourcelist = [x for x in os.listdir('.') if os.path.isdir(x)]
 
 print "Syncing %s to %d target(s)" % (original, len(sourcelist))
 for indir in sourcelist: